Click here to switch to the map view.

The map label for this gene is rpl6p

Identifier: 218884470

GI number: 218884470

Start: 1085767

End: 1086321

Strand: Reverse

Name: rpl6p

Synonym: DKAM_1159

Alternate gene names: 218884470

Gene position: 1086321-1085767 (Counterclockwise)

Preceding gene: 218884471

Following gene: 218884469

Centisome position: 79.57

GC content: 43.96

Gene sequence:

>555_bases
ATGGCCAGGGTGTTTCATGTCGCTGAGAAAGTAGAGATCCCTGAGAACGTCGCTGTTGAAGTGGATGGCTTAAGGGTAAC
AGTTAAGGGGCCCAAGGGCATTATTACAAGGGACTTCAGTCATGCTAGAGGAGTATTCATAAGGCTTGAGGACAGGGTTG
TCATCGTTGAAACATTTGTTGCTGATAGGAAGCAGAAGGCCCTAGTTGGGACGATTGCTGCGCATATACGTAACATGATT
ACAGGTGTTGTAAGGGGCTACCGCTACAAATTAAAGATAATATTCTCTCACTTCCCGATCACAGTATCTGTTGATGAGAA
GAACAAGGTTGTCAGGATAAGGAATTTCATGGGGGAGAAATCAGATAGGATAGCCAAGATATACGGTAATGTCAAGGTGA
AGGTGAGTGGTGAGGATATAATTATTGAGGGAGTCGATATTGAGGAGGTTGGGTTAACGGCTGCATCAATTGAGAGGGCT
ACTAGGGTCACTGATAGAGATAGACGTGTTTTCATGGATGGAATATATATTTATGAGAAGGGTGAGGCCTTATGA

Upstream 100 bases:

>100_bases
TAATAGTGTCAACACCTTATGGTGTCCTCTCTCACAAGGAGGCTGTTGAAAAACAAACCGGTGGGGTATTACTTGCATAC
TGTTACTAGGTGATGTATGT

Downstream 100 bases:

>100_bases
GCACGGGGCTGGATCGTTTACTCAGGTTAAGACAGGAAATGAATAAGAGGAGGCCGGTTTTCCTCAGGTATCTATGGTGG
AAGAAACCGAAGTTCAAGAA

Product: 50S ribosomal protein L6P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MARVFHVAEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLEDRVVIVETFVADRKQKALVGTIAAHIRNMI
TGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSGEDIIIEGVDIEEVGLTAASIERA
TRVTDRDRRVFMDGIYIYEKGEAL

Sequences:

>Translated_184_residues
MARVFHVAEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLEDRVVIVETFVADRKQKALVGTIAAHIRNMI
TGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSGEDIIIEGVDIEEVGLTAASIERA
TRVTDRDRRVFMDGIYIYEKGEAL
>Mature_183_residues
ARVFHVAEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLEDRVVIVETFVADRKQKALVGTIAAHIRNMIT
GVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSGEDIIIEGVDIEEVGLTAASIERAT
RVTDRDRRVFMDGIYIYEKGEAL

Specific function: This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center

COG id: COG0097

COG function: function code J; Ribosomal protein L6P/L9E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L6P family

Homologues:

Organism=Homo sapiens, GI15431303, Length=178, Percent_Identity=42.6966292134831, Blast_Score=142, Evalue=1e-34,
Organism=Homo sapiens, GI67944630, Length=178, Percent_Identity=42.6966292134831, Blast_Score=142, Evalue=1e-34,
Organism=Homo sapiens, GI310133141, Length=157, Percent_Identity=40.7643312101911, Blast_Score=118, Evalue=3e-27,
Organism=Homo sapiens, GI310118095, Length=130, Percent_Identity=40.7692307692308, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17554746, Length=175, Percent_Identity=38.2857142857143, Blast_Score=123, Evalue=5e-29,
Organism=Saccharomyces cerevisiae, GI6324262, Length=178, Percent_Identity=35.3932584269663, Blast_Score=127, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6321291, Length=178, Percent_Identity=34.2696629213483, Blast_Score=123, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24583602, Length=181, Percent_Identity=36.4640883977901, Blast_Score=127, Evalue=4e-30,
Organism=Drosophila melanogaster, GI17137198, Length=181, Percent_Identity=36.4640883977901, Blast_Score=127, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL6_DESK1 (B8D5V4)

Other databases:

- EMBL:   CP001140
- RefSeq:   YP_002428852.1
- GeneID:   7171246
- GenomeReviews:   CP001140_GR
- KEGG:   dka:DKAM_1159
- HOGENOM:   HBG606796
- OMA:   CSHIENM
- ProtClustDB:   PRK05518
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01365_A
- InterPro:   IPR000702
- InterPro:   IPR020040
- InterPro:   IPR019907
- Gene3D:   G3DSA:3.90.930.12
- PANTHER:   PTHR11655
- PIRSF:   PIRSF002162
- TIGRFAMs:   TIGR03653

Pfam domain/function: PF00347 Ribosomal_L6; SSF56053 Ribosomal_L6

EC number: NA

Molecular weight: Translated: 20771; Mature: 20639

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS00700 RIBOSOMAL_L6_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVFHVAEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLEDRVVIVETFV
CCCEEEEHHHCCCCCCEEEEECCEEEEEECCCCEEEECCCCCCEEEEEEECCEEEEEEEC
ADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEK
CCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCEEEEECCCCCEEEEEHHCCCC
SDRIAKIYGNVKVKVSGEDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEK
CCCEEEEECCEEEEECCCEEEEECCCHHHHCCCHHHHHHHHCCCCCCCEEEEEEEEEEEC
GEAL
CCCC
>Mature Secondary Structure 
ARVFHVAEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLEDRVVIVETFV
CCEEEEHHHCCCCCCEEEEECCEEEEEECCCCEEEECCCCCCEEEEEEECCEEEEEEEC
ADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEK
CCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCEEEEECCCCCEEEEEHHCCCC
SDRIAKIYGNVKVKVSGEDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEK
CCCEEEEECCEEEEECCCEEEEECCCHHHHCCCHHHHHHHHCCCCCCCEEEEEEEEEEEC
GEAL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA