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The map label for this gene is srp19

Identifier: 218884236

GI number: 218884236

Start: 879873

End: 880160

Strand: Reverse

Name: srp19

Synonym: DKAM_0925

Alternate gene names: 218884236

Gene position: 880160-879873 (Counterclockwise)

Preceding gene: 218884237

Following gene: 218884234

Centisome position: 64.47

GC content: 46.18

Gene sequence:

>288_bases
TTGAGTCGGGATAACAAAGGTAGGAGGATCGTTGTATACCCGGCTTACATAGACTCGAAAAAGAGCCGTAGTGAAGGAAG
GAAGATATCTTTAGGCAAGGCTGTGCCAAATCCTAGTATCAAGGAAATAATAGAGGCCTCGGAGAGACTCGGGTTAAACC
CCTTGTACGAGGAGAAACACTACCCGAGGCTAAAAGAGGGAAAAGGGCGTGTCTTGGTTGATAAGAAATCAGGGAAACTA
GAGATCCTCCGCATGATTGCCGATGAGATTAGAAAGATGCGGGGATAA

Upstream 100 bases:

>100_bases
CAAGACCCGGACAAGACGGAGTCTTGAACGGGATCCTCCTTAAGAAGTAGGCTGTGAGGGCCCTTGGATAGGATAATCAC
CAAGTATCAAGGGGGATTTT

Downstream 100 bases:

>100_bases
CTGGTTGAGAACCAATGGACTATATTCATTGTTTTTATCCAAGTACCTCTGAATGGGGTTCAGGTCCCATATAGGTTTAT
ATAAATTGGTTTCATCCCTT

Product: signal recognition particle protein Srp19

Products: NA

Alternate protein names: SRP19

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MSRDNKGRRIVVYPAYIDSKKSRSEGRKISLGKAVPNPSIKEIIEASERLGLNPLYEEKHYPRLKEGKGRVLVDKKSGKL
EILRMIADEIRKMRG

Sequences:

>Translated_95_residues
MSRDNKGRRIVVYPAYIDSKKSRSEGRKISLGKAVPNPSIKEIIEASERLGLNPLYEEKHYPRLKEGKGRVLVDKKSGKL
EILRMIADEIRKMRG
>Mature_94_residues
SRDNKGRRIVVYPAYIDSKKSRSEGRKISLGKAVPNPSIKEIIEASERLGLNPLYEEKHYPRLKEGKGRVLVDKKSGKLE
ILRMIADEIRKMRG

Specific function: Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP

COG id: COG1400

COG function: function code U; Signal recognition particle 19 kDa protein

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SRP19 family

Homologues:

Organism=Caenorhabditis elegans, GI32563713, Length=105, Percent_Identity=40, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SRP19_DESK1 (B8D570)

Other databases:

- EMBL:   CP001140
- RefSeq:   YP_002428618.1
- GeneID:   7171056
- GenomeReviews:   CP001140_GR
- KEGG:   dka:DKAM_0925
- HOGENOM:   HBG629394
- OMA:   VEACKEL
- ProtClustDB:   PRK00754
- HAMAP:   MF_00305
- InterPro:   IPR002778
- InterPro:   IPR022938
- Gene3D:   G3DSA:3.30.56.30
- PANTHER:   PTHR17453

Pfam domain/function: PF01922 SRP19; SSF69695 Signal_recog_particle_SRP19

EC number: NA

Molecular weight: Translated: 10893; Mature: 10762

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRDNKGRRIVVYPAYIDSKKSRSEGRKISLGKAVPNPSIKEIIEASERLGLNPLYEEKH
CCCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
YPRLKEGKGRVLVDKKSGKLEILRMIADEIRKMRG
CCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRDNKGRRIVVYPAYIDSKKSRSEGRKISLGKAVPNPSIKEIIEASERLGLNPLYEEKH
CCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
YPRLKEGKGRVLVDKKSGKLEILRMIADEIRKMRG
CCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA