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The map label for this gene is 218883408

Identifier: 218883408

GI number: 218883408

Start: 82905

End: 83186

Strand: Reverse

Name: 218883408

Synonym: DKAM_0094

Alternate gene names: NA

Gene position: 83186-82905 (Counterclockwise)

Preceding gene: 218883409

Following gene: 218883406

Centisome position: 6.09

GC content: 44.68

Gene sequence:

>282_bases
ATGAGCAACGTGTCCAAGGGCTATAGACCGCCTTCACCTCTAAAGGTATTGAAGAGTGCTGAAGGACAAGTAGTGCTTGT
AAGGATCAAAGGTGGTATCGAGTATGTTGGAACGCTGGATTTAATAGACCCCACGATGAATATAGTGTTGAGTGACTGTA
CAGAGTATGGTGGTGATGGTAGGCCAACTTCGAGATATGGTAAGATAATAATAAGAGGCAGTCACGTGGAGTTCATCAGC
ACCAATTATGGACAAGTGGCACCAGACAAGGTTACTCTGTGA

Upstream 100 bases:

>100_bases
GCAGTGGATAATGGGCGTTATCTCCACTGGAAAATACTTTTAAAGACTACTAAGTTTATATACACCATTGTATTAAACTA
GTAATATATGGTGTATATTC

Downstream 100 bases:

>100_bases
TTAAGGAAAGAATATTATGGAGAAATATTACAGCAGGATAGAGATTTTCATCCTAGCTAATGATTATGCTGAAATGACCA
AGGGTTTTCTAGCACAGCAT

Product: Small nuclear ribonucleoprotein, LSM family

Products: NA

Alternate protein names: LSM Family Small Nuclear Ribonucleoprotein; SnRNP Sm-Like Protein; Small Nuclear Ribonucleoprotein Homolog; Small Nuclear Ribonucleoprotein; Sm-Like Protein; Small Nuclear Ribonucleoprotein LSM Family

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MSNVSKGYRPPSPLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEYGGDGRPTSRYGKIIIRGSHVEFIS
TNYGQVAPDKVTL

Sequences:

>Translated_93_residues
MSNVSKGYRPPSPLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEYGGDGRPTSRYGKIIIRGSHVEFIS
TNYGQVAPDKVTL
>Mature_92_residues
SNVSKGYRPPSPLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEYGGDGRPTSRYGKIIIRGSHVEFIST
NYGQVAPDKVTL

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10069; Mature: 9938

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVSKGYRPPSPLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEYGGDG
CCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHCCCCC
RPTSRYGKIIIRGSHVEFISTNYGQVAPDKVTL
CCCCCCCEEEEECCCEEEEECCCCCCCCCEECC
>Mature Secondary Structure 
SNVSKGYRPPSPLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEYGGDG
CCCCCCCCCCCHHHHHHCCCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHCCCCC
RPTSRYGKIIIRGSHVEFISTNYGQVAPDKVTL
CCCCCCCEEEEECCCEEEEECCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA