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The map label for this gene is ycfH [C]

Identifier: 218883348

GI number: 218883348

Start: 31384

End: 32094

Strand: Direct

Name: ycfH [C]

Synonym: DKAM_0034

Alternate gene names: 218883348

Gene position: 31384-32094 (Clockwise)

Preceding gene: 218883347

Following gene: 218883351

Centisome position: 2.3

GC content: 42.05

Gene sequence:

>711_bases
ATGCATATTCACTGCCATGAATTAAGCCCTGATACGATAAAGGAGTATCTTGGGAGATACAAGTTGGTGTGTGTCTCAGA
CGATCCATTGTCGAGTATGAAGACTATGAGACTTGCTGAAGCATACCCCGATATAACGCCCTGTGTCGGTATTCATCCAT
GGAGCATTAGGGAGTATAGTATCAATGATTTAAAGAACATATTAAATACAGCGGTGGAAAACAATATCAAATGCCTGGGG
GAGATAGGGCTTGATAAACGTTTCACACCGGAAACCTTTAATAAGCAGTTGGAGTTCTTAAGGGAAGCCGTGGTTTACGC
TAGAGAGTATGGTTTAATACTCAATATACACGCAGCTGGTGCTTGGAAGGAAGTATTCGATGAAGTATATAGAGGAGGTA
TTGAAAAGGCATTCTTTCACTGGTACACCGGTCCCCAGGACCTACTGAGTAGCATAGTTGAAGCAGGCTACTATGTAGGA
TTAAACCCTGCGTGGAGGATCCAGGTTAAACATAGGGAGATTATTGCACGGGTACCAGTGGAAAATGTATTAACAGAGAG
CGATGCCCCATATGAGTACCATGGTTTGAAACTAATGCCCGATCTAATACCGGGCTCAATAGAATATTTAGCGTCTATAA
CAGGTAGTAGTGTTGGAGAGATAGAGGAGAAAATATGGAGGAACTACTTAAAAATCATTGGCTCTAAGTAG

Upstream 100 bases:

>100_bases
TATATTTAGCGATGAATTAAACAGGGGAAAGATACTATTGCTACTAGGAAATAATATTCTTAATATTCATTGATTCGGGG
TGTAAGTATTGTTAATCGAC

Downstream 100 bases:

>100_bases
AGGCGGATGCTTCATCCTTGAATACCACTAATACGAGGTTGCCGTTTATATTACGGGTAATTGTAACCGAGAAATCGAGT
GTATTTATACTAGCACTCTT

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MHIHCHELSPDTIKEYLGRYKLVCVSDDPLSSMKTMRLAEAYPDITPCVGIHPWSIREYSINDLKNILNTAVENNIKCLG
EIGLDKRFTPETFNKQLEFLREAVVYAREYGLILNIHAAGAWKEVFDEVYRGGIEKAFFHWYTGPQDLLSSIVEAGYYVG
LNPAWRIQVKHREIIARVPVENVLTESDAPYEYHGLKLMPDLIPGSIEYLASITGSSVGEIEEKIWRNYLKIIGSK

Sequences:

>Translated_236_residues
MHIHCHELSPDTIKEYLGRYKLVCVSDDPLSSMKTMRLAEAYPDITPCVGIHPWSIREYSINDLKNILNTAVENNIKCLG
EIGLDKRFTPETFNKQLEFLREAVVYAREYGLILNIHAAGAWKEVFDEVYRGGIEKAFFHWYTGPQDLLSSIVEAGYYVG
LNPAWRIQVKHREIIARVPVENVLTESDAPYEYHGLKLMPDLIPGSIEYLASITGSSVGEIEEKIWRNYLKIIGSK
>Mature_236_residues
MHIHCHELSPDTIKEYLGRYKLVCVSDDPLSSMKTMRLAEAYPDITPCVGIHPWSIREYSINDLKNILNTAVENNIKCLG
EIGLDKRFTPETFNKQLEFLREAVVYAREYGLILNIHAAGAWKEVFDEVYRGGIEKAFFHWYTGPQDLLSSIVEAGYYVG
LNPAWRIQVKHREIIARVPVENVLTESDAPYEYHGLKLMPDLIPGSIEYLASITGSSVGEIEEKIWRNYLKIIGSK

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=215, Percent_Identity=27.906976744186, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI110349730, Length=215, Percent_Identity=27.4418604651163, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI226061853, Length=222, Percent_Identity=27.027027027027, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI226061614, Length=206, Percent_Identity=25.7281553398058, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI226061595, Length=178, Percent_Identity=25.8426966292135, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787342, Length=193, Percent_Identity=23.8341968911917, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 26962; Mature: 26962

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIHCHELSPDTIKEYLGRYKLVCVSDDPLSSMKTMRLAEAYPDITPCVGIHPWSIREYS
CEEEECCCCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
INDLKNILNTAVENNIKCLGEIGLDKRFTPETFNKQLEFLREAVVYAREYGLILNIHAAG
HHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
AWKEVFDEVYRGGIEKAFFHWYTGPQDLLSSIVEAGYYVGLNPAWRIQVKHREIIARVPV
CHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCEEECCCCEEEEEEHHHHHHHHCCH
ENVLTESDAPYEYHGLKLMPDLIPGSIEYLASITGSSVGEIEEKIWRNYLKIIGSK
HHHHCCCCCCCEECCCEECHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHIHCHELSPDTIKEYLGRYKLVCVSDDPLSSMKTMRLAEAYPDITPCVGIHPWSIREYS
CEEEECCCCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
INDLKNILNTAVENNIKCLGEIGLDKRFTPETFNKQLEFLREAVVYAREYGLILNIHAAG
HHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
AWKEVFDEVYRGGIEKAFFHWYTGPQDLLSSIVEAGYYVGLNPAWRIQVKHREIIARVPV
CHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCEEECCCCEEEEEEHHHHHHHHCCH
ENVLTESDAPYEYHGLKLMPDLIPGSIEYLASITGSSVGEIEEKIWRNYLKIIGSK
HHHHCCCCCCCEECCCEECHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]