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The map label for this gene is smf [H]

Identifier: 218710996

GI number: 218710996

Start: 3259468

End: 3260580

Strand: Reverse

Name: smf [H]

Synonym: VS_3124

Alternate gene names: 218710996

Gene position: 3260580-3259468 (Counterclockwise)

Preceding gene: 218710997

Following gene: 218710995

Centisome position: 98.83

GC content: 47.98

Gene sequence:

>1113_bases
GTGAATGAGCAACAACTGAGCGCTTGGCTAACTCTAAGTTTTGTACCGCAATTGGGTGGCAAGCGACTTTCTCGACTGCT
GAGCATTGATTCTCCTTTTAATATTGTTGGCTACTCAAGCCAGCAACTGCAAGCAATTGGCTTGTCAGCTAAGCAAATCT
CCTATTTAGGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCCTAGCGTGGCAAGCAAGACAACCCAACCATCACATTATT
ACCCCGAATTGCTCGCATTATCCCAAACTGCTCAATGAGACCGCCTCTGCGCCGAGCGTGCTTTTCGTTAAAGGTCACGT
TGAAAAACTGATTGAACCTCAAATCGCGATGGTTGGCAGTCGTAATGCCAGCCTCGAAGGGTTGCAAACCGCGAAGTCCT
TCGCCAAAGAGTTCGTCCAAAACGGTTTTATCGTTACGAGTGGCTTAGCACTAGGTATTGATGGTTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAAACTTTCGCGGTTTTAGGCTCTGGCTTAGATTCCATTTACCCTGCACGGCACAGAAACTT
AGCCGATAGAATCTGCGAAAATGGTGCGCTGATTTCAGAGTTTCGTCCAAACGCAAAACCACGACCTGAACATTTCCCTC
GGCGTAACCGTATTATAAGTGGGTTATCGCTCGGAACCTTGGTAGTTGAGGCAGCTGAAAAGAGTGGCTCTTTGATTACA
GCTCGCTATGCCATGGAGCAAGGTCGAGAGGTGTTTGCGCTTCCTGGCTCTATTCATAACCCAACCAGTCGCGGGGGCAA
CAGTTTAATCAAAGCTGGAGCATGCTTGGTACAGAGTGCACAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATCGATCAGCAACCTAGCTTGTTCGAACCTACGCCCAGTATGGGGGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAG

Upstream 100 bases:

>100_bases
GCTTGGCTTTGATCACTCAGAGCTCTAAGCCTGTTAGCAATGACATTCTGGCGGTATCGCCTTTGGACCTTGCTTTGACG
GAAGAGCTTAAGGGCACCGA

Downstream 100 bases:

>100_bases
CTATGATGATGGACATACTGATGTACTTGTTTGAAACCTACATCCATAGCGATTCAGAATTGCAGGTGGATCAAGATGAG
CTGGAAGATGAGCTTCTTCG

Product: Smf protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPFNIVGYSSQQLQAIGLSAKQISYLGEQAPREVEACLAWQARQPNHHII
TPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGFIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPNAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPSMGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Sequences:

>Translated_370_residues
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPFNIVGYSSQQLQAIGLSAKQISYLGEQAPREVEACLAWQARQPNHHII
TPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGFIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPNAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPSMGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG
>Mature_370_residues
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPFNIVGYSSQQLQAIGLSAKQISYLGEQAPREVEACLAWQARQPNHHII
TPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGFIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPNAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPSMGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=360, Percent_Identity=46.3888888888889, Blast_Score=277, Evalue=6e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 40064; Mature: 40064

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPFNIVGYSSQQLQAIGLSAKQISYLGEQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHCCCHHHHHHHHHHC
PREVEACLAWQARQPNHHIITPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGS
HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHCCCCCEEEEEEHHHHHHCCCHHEEECC
RNASLEGLQTAKSFAKEFVQNGFIVTSGLALGIDGYAHDGALDKGGETFAVLGSGLDSIY
CCCCHHHHHHHHHHHHHHHHCCEEEECCEEECCCCCCCCCCCCCCCCEEEEECCCHHHHC
PARHRNLADRICENGALISEFRPNAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
CHHHHHHHHHHHCCCCEEHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEEE
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPS
EHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LFEPTPSMGENEQLPFPQLLANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAV
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE
SGGYIRKGRG
ECCEEECCCC
>Mature Secondary Structure
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPFNIVGYSSQQLQAIGLSAKQISYLGEQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHCCCHHHHHHHHHHC
PREVEACLAWQARQPNHHIITPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGS
HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHCCCCCEEEEEEHHHHHHCCCHHEEECC
RNASLEGLQTAKSFAKEFVQNGFIVTSGLALGIDGYAHDGALDKGGETFAVLGSGLDSIY
CCCCHHHHHHHHHHHHHHHHCCEEEECCEEECCCCCCCCCCCCCCCCEEEEECCCHHHHC
PARHRNLADRICENGALISEFRPNAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
CHHHHHHHHHHHCCCCEEHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEEE
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPS
EHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LFEPTPSMGENEQLPFPQLLANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAV
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE
SGGYIRKGRG
ECCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8432722; 8112305; 9278503 [H]