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The map label for this gene is dinF [H]

Identifier: 218710902

GI number: 218710902

Start: 3154778

End: 3156139

Strand: Reverse

Name: dinF [H]

Synonym: VS_3004

Alternate gene names: 218710902

Gene position: 3156139-3154778 (Counterclockwise)

Preceding gene: 218710903

Following gene: 218710900

Centisome position: 95.66

GC content: 45.08

Gene sequence:

>1362_bases
GTGATCGTGAAGTTATTTAATCCCCAAACTATTTTTCAAACGCTATCCAATCAGGCGATGCACAAAAAAGTGCTGTTGCT
CGCGATCCCGATGGTTCTTTCCAATATTACGGTTCCACTGTTGGGTTTAGTCGATGCTGCGGTTATCGGTCACTTAGAGC
ATTCTTGGTATTTAGGTGGTGTGGCCTTAGGCGGCACGATGATCAGCGTGACTTTTTGGTTGCTTGGTTTCCTACGAATG
TCGACGACGGGACTAGCCGCGCAATCTTATGGGGCGAACGATGGCAAGCAACTTGGTTTAGTCTTTGTGCAAGGCGTGAC
CATGGCACTTGGGTTTGCTGGTGTCTTCTTGCTATTGCATAGCTTTGTTGCGGATGCGGTTTTCTCTCTGAGTAGTGCCA
GTGACCAAGTGAAACACTATGGTCAGCAATATTTCTCGATCCGAGCATGGAGTGCGCCTGCTGCGCTAACTAACTTTGTA
ATTTTAGGTTGGTTGCTCGGAACCCAAAATGCTAAAGCGCCAATGTGGATGGTGATCATTACTAATATCACCAACATCGT
TTTAGATATCGTATTTGTGATTGGCTTCGGCTGGCAAGTGGAAGGAGCAGCATTGGCATCTGTAATAGCTGATTATGCCG
GTCTAACATTTGGCCTGATTTGTGTTTACCGAATATGGGTGAAGAAGCAGTTACCATCACCATGGGATCTGCTTAAGAAA
ACCAGTCAAGGCTTGAGTCGTTTCGTAAAACTGAATCGCGATATCTTTCTGCGTTCCTTATGTCTGCAAGCCACTTTTAC
TTTTATGACTTTCCAGGGCGCAAGCTTTGGTGATGATGTGGTCGCAGCCAATGCGGTACTGATGAGTTTCTTGATGATCA
TCTCTTATGGGATGGATGGTTTTGCCTACGCAATGGAAGCCATGGTCGGTAAAGCGATCGGCGCGAAAGATAAAGATGAG
CTCAATCAGTCTTTGATAAGTACTTTCTTTTGGAGTTTCAATATTTGTTTGGTACTGACCATAGTGTTCGCGATTGCTGG
GTCTAGTTTGATTAATATGATCACCACAATCCCAGAAGTGAAGACTCAGGCTGAAGTTTATTTACCGTGGTTGATTGCGA
TGCCCCTCGTTTCTATGTGGTGCTTCTTGCTGGATGGTATCTTCGTGGGCGCAACCAAAGGCAAAGATATGCGTAACAGT
ATGTTTGTTGCGACCTGCAGTTTCTTCGTAATTTTCTACTTAGCATCAGGTTTTGATAACCATGCGCTGTGGCTAGCAAT
GTTGAGCTTTATGGCGATGCGTGGGATTGGTCTTGGTGTTTTATTTGTTTCTCAGTGGAAGAAAGGAGAGTTTCTCGCTT
AG

Upstream 100 bases:

>100_bases
TGCCTCGTTATAGGTATTCGTTATCGATAAAAGGCAAGCACCTCCCACACCATAGTGAAAGCCCACTCACTAGGTTAAAC
TATCGCCTCTAATCTAAGAG

Downstream 100 bases:

>100_bases
CTTGCATAGCTTAGTTCAGGGAACGAAAAATAAAAACAGCAAGCTCATGGCTTGCTGTTTATGTATTTTGCCTACAGGTG
GTCAAATAGTCCTGTTGGTT

Product: DNA-damage-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MIVKLFNPQTIFQTLSNQAMHKKVLLLAIPMVLSNITVPLLGLVDAAVIGHLEHSWYLGGVALGGTMISVTFWLLGFLRM
STTGLAAQSYGANDGKQLGLVFVQGVTMALGFAGVFLLLHSFVADAVFSLSSASDQVKHYGQQYFSIRAWSAPAALTNFV
ILGWLLGTQNAKAPMWMVIITNITNIVLDIVFVIGFGWQVEGAALASVIADYAGLTFGLICVYRIWVKKQLPSPWDLLKK
TSQGLSRFVKLNRDIFLRSLCLQATFTFMTFQGASFGDDVVAANAVLMSFLMIISYGMDGFAYAMEAMVGKAIGAKDKDE
LNQSLISTFFWSFNICLVLTIVFAIAGSSLINMITTIPEVKTQAEVYLPWLIAMPLVSMWCFLLDGIFVGATKGKDMRNS
MFVATCSFFVIFYLASGFDNHALWLAMLSFMAMRGIGLGVLFVSQWKKGEFLA

Sequences:

>Translated_453_residues
MIVKLFNPQTIFQTLSNQAMHKKVLLLAIPMVLSNITVPLLGLVDAAVIGHLEHSWYLGGVALGGTMISVTFWLLGFLRM
STTGLAAQSYGANDGKQLGLVFVQGVTMALGFAGVFLLLHSFVADAVFSLSSASDQVKHYGQQYFSIRAWSAPAALTNFV
ILGWLLGTQNAKAPMWMVIITNITNIVLDIVFVIGFGWQVEGAALASVIADYAGLTFGLICVYRIWVKKQLPSPWDLLKK
TSQGLSRFVKLNRDIFLRSLCLQATFTFMTFQGASFGDDVVAANAVLMSFLMIISYGMDGFAYAMEAMVGKAIGAKDKDE
LNQSLISTFFWSFNICLVLTIVFAIAGSSLINMITTIPEVKTQAEVYLPWLIAMPLVSMWCFLLDGIFVGATKGKDMRNS
MFVATCSFFVIFYLASGFDNHALWLAMLSFMAMRGIGLGVLFVSQWKKGEFLA
>Mature_453_residues
MIVKLFNPQTIFQTLSNQAMHKKVLLLAIPMVLSNITVPLLGLVDAAVIGHLEHSWYLGGVALGGTMISVTFWLLGFLRM
STTGLAAQSYGANDGKQLGLVFVQGVTMALGFAGVFLLLHSFVADAVFSLSSASDQVKHYGQQYFSIRAWSAPAALTNFV
ILGWLLGTQNAKAPMWMVIITNITNIVLDIVFVIGFGWQVEGAALASVIADYAGLTFGLICVYRIWVKKQLPSPWDLLKK
TSQGLSRFVKLNRDIFLRSLCLQATFTFMTFQGASFGDDVVAANAVLMSFLMIISYGMDGFAYAMEAMVGKAIGAKDKDE
LNQSLISTFFWSFNICLVLTIVFAIAGSSLINMITTIPEVKTQAEVYLPWLIAMPLVSMWCFLLDGIFVGATKGKDMRNS
MFVATCSFFVIFYLASGFDNHALWLAMLSFMAMRGIGLGVLFVSQWKKGEFLA

Specific function: Unknown

COG id: COG0534

COG function: function code V; Na+-driven multidrug efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790477, Length=443, Percent_Identity=44.2437923250564, Blast_Score=322, Evalue=2e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002528 [H]

Pfam domain/function: PF01554 MatE [H]

EC number: NA

Molecular weight: Translated: 49643; Mature: 49643

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIVKLFNPQTIFQTLSNQAMHKKVLLLAIPMVLSNITVPLLGLVDAAVIGHLEHSWYLGG
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECH
VALGGTMISVTFWLLGFLRMSTTGLAAQSYGANDGKQLGLVFVQGVTMALGFAGVFLLLH
HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SFVADAVFSLSSASDQVKHYGQQYFSIRAWSAPAALTNFVILGWLLGTQNAKAPMWMVII
HHHHHHHHHHHCHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEHH
TNITNIVLDIVFVIGFGWQVEGAALASVIADYAGLTFGLICVYRIWVKKQLPSPWDLLKK
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
TSQGLSRFVKLNRDIFLRSLCLQATFTFMTFQGASFGDDVVAANAVLMSFLMIISYGMDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHCCCH
FAYAMEAMVGKAIGAKDKDELNQSLISTFFWSFNICLVLTIVFAIAGSSLINMITTIPEV
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
KTQAEVYLPWLIAMPLVSMWCFLLDGIFVGATKGKDMRNSMFVATCSFFVIFYLASGFDN
HCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
HALWLAMLSFMAMRGIGLGVLFVSQWKKGEFLA
HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]