Click here to switch to the map view.

The map label for this gene is agmR [H]

Identifier: 218710848

GI number: 218710848

Start: 3085849

End: 3086478

Strand: Direct

Name: agmR [H]

Synonym: VS_2931

Alternate gene names: 218710848

Gene position: 3085849-3086478 (Clockwise)

Preceding gene: 218710847

Following gene: 218710850

Centisome position: 93.53

GC content: 47.46

Gene sequence:

>630_bases
ATGGACTCGACCTATACCATCATCATTGCTGATGACCACCCTCTCTTTCGCAACGCCCTGTTTCAGTCAGTTCATATGGC
TATCAGCGGTGCGAACCTGCTTGAGGCTGATTCTCTCGATGCCTTACTGACTCTACTAAAAAAAGAAGATGAACCAGACC
TGTTACTTCTCGACCTTAAAATGCCGGGAGCAAACGGGATGTCGGGCTTAATTCAACTGCGTGCTGAATATCCAGATTTA
CCGATCGTGGTGATCTCAGCCAGCGAGGATGCCAGCGTTGTCACTCAAGTGAAAAGCCACGGTGCCTTTGGTTTCATTCC
TAAGTCGAGTGATATGCGTGAATTGGTCAGTGCACTGAATCAAGTGCTGAATGGCGACCCGTTCTTTCCTGAAGGGCTTA
TCACCAATAATGCAGCCTGTAGCGACCTTGCGGAAAAGCTTTCCACGCTGACACCTCAGCAATACAAGGTGCTAGGGATG
CTTTCAGACGGCTTGCTAAACAAGCAAATCGCGTATGAATTGAATGTTTCGGAAGCGACTATCAAAGCACATATGACAGC
CATCTTCCGTAAACTGGATGTGAAAAACCGAACTCAGGCGGTTATCTTGCTACAAGAAGTCCACAACTAA

Upstream 100 bases:

>100_bases
AAAAGTCGATATGGTTCAGACTTTTAATGCATAAATATTGTCCACATACTCAATCAGGATGATAATAAATATTAACTAAA
TTGTTAAAAGTATGAACGTC

Downstream 100 bases:

>100_bases
ACTTCACTTATATCCTCTTCTAAAGTCGTCTTTGGCAAACATAAACCCAACCTGACGACTTTATGATCATCTATCTCTGC
GACCACCCAAGTAATGTCAT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MDSTYTIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLKKEDEPDLLLLDLKMPGANGMSGLIQLRAEYPDL
PIVVISASEDASVVTQVKSHGAFGFIPKSSDMRELVSALNQVLNGDPFFPEGLITNNAACSDLAEKLSTLTPQQYKVLGM
LSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVILLQEVHN

Sequences:

>Translated_209_residues
MDSTYTIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLKKEDEPDLLLLDLKMPGANGMSGLIQLRAEYPDL
PIVVISASEDASVVTQVKSHGAFGFIPKSSDMRELVSALNQVLNGDPFFPEGLITNNAACSDLAEKLSTLTPQQYKVLGM
LSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVILLQEVHN
>Mature_209_residues
MDSTYTIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLKKEDEPDLLLLDLKMPGANGMSGLIQLRAEYPDL
PIVVISASEDASVVTQVKSHGAFGFIPKSSDMRELVSALNQVLNGDPFFPEGLITNNAACSDLAEKLSTLTPQQYKVLGM
LSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVILLQEVHN

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=203, Percent_Identity=32.512315270936, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1789937, Length=198, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788712, Length=192, Percent_Identity=29.6875, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787473, Length=208, Percent_Identity=34.6153846153846, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786747, Length=191, Percent_Identity=27.2251308900524, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788546, Length=201, Percent_Identity=29.3532338308458, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788222, Length=192, Percent_Identity=22.3958333333333, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22806; Mature: 22806

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSTYTIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLKKEDEPDLLLLDLK
CCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEE
MPGANGMSGLIQLRAEYPDLPIVVISASEDASVVTQVKSHGAFGFIPKSSDMRELVSALN
CCCCCCCHHHEEEEECCCCCCEEEEECCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHH
QVLNGDPFFPEGLITNNAACSDLAEKLSTLTPQQYKVLGMLSDGLLNKQIAYELNVSEAT
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEHHHCCCCCCEEEEEECCCHHH
IKAHMTAIFRKLDVKNRTQAVILLQEVHN
HHHHHHHHHHHHCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MDSTYTIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLKKEDEPDLLLLDLK
CCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEE
MPGANGMSGLIQLRAEYPDLPIVVISASEDASVVTQVKSHGAFGFIPKSSDMRELVSALN
CCCCCCCHHHEEEEECCCCCCEEEEECCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHH
QVLNGDPFFPEGLITNNAACSDLAEKLSTLTPQQYKVLGMLSDGLLNKQIAYELNVSEAT
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEHHHCCCCCCEEEEEECCCHHH
IKAHMTAIFRKLDVKNRTQAVILLQEVHN
HHHHHHHHHHHHCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]