Click here to switch to the map view.

The map label for this gene is yiiR [C]

Identifier: 218710826

GI number: 218710826

Start: 3062435

End: 3062857

Strand: Reverse

Name: yiiR [C]

Synonym: VS_2909

Alternate gene names: 218710826

Gene position: 3062857-3062435 (Counterclockwise)

Preceding gene: 218710827

Following gene: 218710822

Centisome position: 92.83

GC content: 45.86

Gene sequence:

>423_bases
ATGTCGATGAAAGATTTACTGCTCTCTTTCAAAGGGAGAATTGGTCGTAAGACTTACTGGATTTGGAATATTTTCTACTA
CATAGCGATCACTGGTTTTGCTTCTGGTATATCGGTGTTGTTCCCTGCTTACTCTTACATCCTGCTACCTGTATTCCTAT
TGCTGCTAGTGATCCCAGATCTTGCGGTCACCGCTAAGCGCTGGCACGACCGTAATAAGTCGAATTACTGGTTACTACTA
AATGTGCCCCTAGTACTGGGTCGTTTGGCTTCGCCAATGGCAGCGACTACCACTGAGCCGGTATCGCCAATCCATATGGT
TGCGACCGTTGCAGCGTTAGTGTGTGGCTTATGGATTCTGATTGAGTGTGGTTTGTTGAAAGGCACAGAAGGCCGTAATG
ATTACGGTGAAGATCCAGTTTAA

Upstream 100 bases:

>100_bases
AAGTGATTAACTAGCTAAAAATAATCAACTAACTAAAAGTGATTCACTAACTATTTGCTGCTAACTTTTTGGTAGCGTAT
TAATTTTTGAGTGTTTTAAG

Downstream 100 bases:

>100_bases
AGATTGGATAATTCATCAGTAAAAAGGGAGCATTGCGCTCCCTTTTTTCTTTTTGATACTTTTCTACTTTAGTACATTTT
GGGTTCTGTATTTGGCCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MSMKDLLLSFKGRIGRKTYWIWNIFYYIAITGFASGISVLFPAYSYILLPVFLLLLVIPDLAVTAKRWHDRNKSNYWLLL
NVPLVLGRLASPMAATTTEPVSPIHMVATVAALVCGLWILIECGLLKGTEGRNDYGEDPV

Sequences:

>Translated_140_residues
MSMKDLLLSFKGRIGRKTYWIWNIFYYIAITGFASGISVLFPAYSYILLPVFLLLLVIPDLAVTAKRWHDRNKSNYWLLL
NVPLVLGRLASPMAATTTEPVSPIHMVATVAALVCGLWILIECGLLKGTEGRNDYGEDPV
>Mature_139_residues
SMKDLLLSFKGRIGRKTYWIWNIFYYIAITGFASGISVLFPAYSYILLPVFLLLLVIPDLAVTAKRWHDRNKSNYWLLLN
VPLVLGRLASPMAATTTEPVSPIHMVATVAALVCGLWILIECGLLKGTEGRNDYGEDPV

Specific function: Unknown

COG id: COG3152

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790355, Length=144, Percent_Identity=34.7222222222222, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15661; Mature: 15530

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMKDLLLSFKGRIGRKTYWIWNIFYYIAITGFASGISVLFPAYSYILLPVFLLLLVIPD
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LAVTAKRWHDRNKSNYWLLLNVPLVLGRLASPMAATTTEPVSPIHMVATVAALVCGLWIL
HHHHHHHHHCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
IECGLLKGTEGRNDYGEDPV
HHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SMKDLLLSFKGRIGRKTYWIWNIFYYIAITGFASGISVLFPAYSYILLPVFLLLLVIPD
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LAVTAKRWHDRNKSNYWLLLNVPLVLGRLASPMAATTTEPVSPIHMVATVAALVCGLWIL
HHHHHHHHHCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
IECGLLKGTEGRNDYGEDPV
HHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA