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The map label for this gene is cbiD [H]

Identifier: 218710607

GI number: 218710607

Start: 2847799

End: 2848983

Strand: Direct

Name: cbiD [H]

Synonym: VS_2661

Alternate gene names: 218710607

Gene position: 2847799-2848983 (Clockwise)

Preceding gene: 218710606

Following gene: 218710608

Centisome position: 86.32

GC content: 48.52

Gene sequence:

>1185_bases
ATGAAGAATACTGTGGTCACAAAAGTTAAACGATCCAAAAATAAGTCCGATCTCCGCAGTGGGTTTACCACCGGAGCGTG
CGCAGCTGCAGCAAGCAGAGCGGCAGTTCAAACACTATTAACCGGACAAAAGCCTGACTATATCTCCATCACTCTACCTA
ATGGTGAGCCCGCTACGTTTAAGGTCGCGTTTATCCAAACATCCAACGATGCGGTGACCGCCAGCATTGTTAAAGATGCA
GGGGACGATCCTGATTGTACCCACGAAGCCCATATTCAGAGTATTGCCCGCTGGCATTCAGAGCCCGGTTTTCACATCGA
TGGGGGTGTTGGCGTAGCTCGTGTGACTCTACCCGGATTAGAACTTCCCGTCGGTCAGGCGGCGATTAATCCCGTACCTC
GAAAAAACATTCTCGATATGGTGACTTTGGAATGGAACCAAGCTACCAGTCAACAGAAAAAACACGTCGGTATATCACTG
GAAATTTGCGTCCCTGATGGCGAAGAGCGAGCCAAGGAAACCATTGGGCCAAGACTCGGTTTAATCGGTGGTATTTCCAT
TCTCGGGACACGCGGAACGGTAAAACCCTACTCCACTTCAGCGTTTTCAGCATCTGTACGTCAATCGGTACAAATAGCGA
AACAAAATGGCCAAAACCACTTGGTTCTCACGACAGGATCTCGAACCGAAAAATCAGCGATGGCCATGCTACCAAGTTAT
GACTCGATGTGTTTTATCCAAGCGGGTGATTTTGTTGGGGTCGGACTGCGCGCAGCAAAACGTTATCAAGTGAGCAAAAT
CACCGTCGTCGCCATGATAGGCAAACTCGGCAAGATGGTCGCTGGGCACATGATGACTCACGTATCCGGTAAAGCTATCG
ACTTTTCATTACTGGCCGACCTCGCCATTCAATCGGGTGCATCGAGTGAATTTGCCGAAGCTGTTAGCCAAGCCAACACA
GGCCGCCACGTACTCGACACATGGAAAGAAGCCCAATCGGGCCAAGAGATTCCCAATTACGACTTTCTTACCTTGCTCTG
CAAACAAGCTGCAGAGCACGCTGCTGTGTATGTCAAACATCACGTCAGCATTGAATTCAAATTGATCGATTTTAACGGCG
ATCTATTAGCAGAACATCTCTGCTCAAAAGGAAGTGATACCAACACTCACTTTCATGATGAATAA

Upstream 100 bases:

>100_bases
AATACCTGGACACACATGAATATCGAGCGGGAAAACTCAACACCATCCATACCTTGTCTAACAAGGGAACGCTCTGTATT
CGTCAATACCTCAAACGTAG

Downstream 100 bases:

>100_bases
GCATGAACAAGGAAAACTCCATGACTAACGATATGCGTCAAATGACCAAGCAAGGCCGTCAAATTGAAAGTGACTCTTTC
TCTATCATTGATGAAGAAAT

Product: cobalamin biosynthesis protein CbiD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MKNTVVTKVKRSKNKSDLRSGFTTGACAAAASRAAVQTLLTGQKPDYISITLPNGEPATFKVAFIQTSNDAVTASIVKDA
GDDPDCTHEAHIQSIARWHSEPGFHIDGGVGVARVTLPGLELPVGQAAINPVPRKNILDMVTLEWNQATSQQKKHVGISL
EICVPDGEERAKETIGPRLGLIGGISILGTRGTVKPYSTSAFSASVRQSVQIAKQNGQNHLVLTTGSRTEKSAMAMLPSY
DSMCFIQAGDFVGVGLRAAKRYQVSKITVVAMIGKLGKMVAGHMMTHVSGKAIDFSLLADLAIQSGASSEFAEAVSQANT
GRHVLDTWKEAQSGQEIPNYDFLTLLCKQAAEHAAVYVKHHVSIEFKLIDFNGDLLAEHLCSKGSDTNTHFHDE

Sequences:

>Translated_394_residues
MKNTVVTKVKRSKNKSDLRSGFTTGACAAAASRAAVQTLLTGQKPDYISITLPNGEPATFKVAFIQTSNDAVTASIVKDA
GDDPDCTHEAHIQSIARWHSEPGFHIDGGVGVARVTLPGLELPVGQAAINPVPRKNILDMVTLEWNQATSQQKKHVGISL
EICVPDGEERAKETIGPRLGLIGGISILGTRGTVKPYSTSAFSASVRQSVQIAKQNGQNHLVLTTGSRTEKSAMAMLPSY
DSMCFIQAGDFVGVGLRAAKRYQVSKITVVAMIGKLGKMVAGHMMTHVSGKAIDFSLLADLAIQSGASSEFAEAVSQANT
GRHVLDTWKEAQSGQEIPNYDFLTLLCKQAAEHAAVYVKHHVSIEFKLIDFNGDLLAEHLCSKGSDTNTHFHDE
>Mature_394_residues
MKNTVVTKVKRSKNKSDLRSGFTTGACAAAASRAAVQTLLTGQKPDYISITLPNGEPATFKVAFIQTSNDAVTASIVKDA
GDDPDCTHEAHIQSIARWHSEPGFHIDGGVGVARVTLPGLELPVGQAAINPVPRKNILDMVTLEWNQATSQQKKHVGISL
EICVPDGEERAKETIGPRLGLIGGISILGTRGTVKPYSTSAFSASVRQSVQIAKQNGQNHLVLTTGSRTEKSAMAMLPSY
DSMCFIQAGDFVGVGLRAAKRYQVSKITVVAMIGKLGKMVAGHMMTHVSGKAIDFSLLADLAIQSGASSEFAEAVSQANT
GRHVLDTWKEAQSGQEIPNYDFLTLLCKQAAEHAAVYVKHHVSIEFKLIDFNGDLLAEHLCSKGSDTNTHFHDE

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 42176; Mature: 42176

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNTVVTKVKRSKNKSDLRSGFTTGACAAAASRAAVQTLLTGQKPDYISITLPNGEPATF
CCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEE
KVAFIQTSNDAVTASIVKDAGDDPDCTHEAHIQSIARWHSEPGFHIDGGVGVARVTLPGL
EEEEEEECCCCEEEEEHHCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCEEEEEECCC
ELPVGQAAINPVPRKNILDMVTLEWNQATSQQKKHVGISLEICVPDGEERAKETIGPRLG
CCCCCHHHCCCCCCCCCEEEEEEECCHHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCHH
LIGGISILGTRGTVKPYSTSAFSASVRQSVQIAKQNGQNHLVLTTGSRTEKSAMAMLPSY
HEECEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCC
DSMCFIQAGDFVGVGLRAAKRYQVSKITVVAMIGKLGKMVAGHMMTHVSGKAIDFSLLAD
CCEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHH
LAIQSGASSEFAEAVSQANTGRHVLDTWKEAQSGQEIPNYDFLTLLCKQAAEHAAVYVKH
HHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEE
HVSIEFKLIDFNGDLLAEHLCSKGSDTNTHFHDE
EEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKNTVVTKVKRSKNKSDLRSGFTTGACAAAASRAAVQTLLTGQKPDYISITLPNGEPATF
CCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEE
KVAFIQTSNDAVTASIVKDAGDDPDCTHEAHIQSIARWHSEPGFHIDGGVGVARVTLPGL
EEEEEEECCCCEEEEEHHCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCEEEEEECCC
ELPVGQAAINPVPRKNILDMVTLEWNQATSQQKKHVGISLEICVPDGEERAKETIGPRLG
CCCCCHHHCCCCCCCCCEEEEEEECCHHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCHH
LIGGISILGTRGTVKPYSTSAFSASVRQSVQIAKQNGQNHLVLTTGSRTEKSAMAMLPSY
HEECEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCC
DSMCFIQAGDFVGVGLRAAKRYQVSKITVVAMIGKLGKMVAGHMMTHVSGKAIDFSLLAD
CCEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHH
LAIQSGASSEFAEAVSQANTGRHVLDTWKEAQSGQEIPNYDFLTLLCKQAAEHAAVYVKH
HHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEE
HVSIEFKLIDFNGDLLAEHLCSKGSDTNTHFHDE
EEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA