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The map label for this gene is nlpD [H]

Identifier: 218710551

GI number: 218710551

Start: 2789291

End: 2790220

Strand: Reverse

Name: nlpD [H]

Synonym: VS_2600

Alternate gene names: 218710551

Gene position: 2790220-2789291 (Counterclockwise)

Preceding gene: 218710552

Following gene: 218710550

Centisome position: 84.57

GC content: 43.12

Gene sequence:

>930_bases
GTGGATAGAAAGTCGATGCGTTCGAAGGTTTTTAAAGGAAGTTCTCTACTGCTTAGCTGTGCACTTGTTGGGTGTGCGGC
GAATTCGCCTGCGCCAGTTTCAAGCTTAAACAAGAATTACTCATCGATTGATCGTGGTAGTTATCGTGGTAGTTACTATG
AAGTGAAAAAAGGCGATACCCTTTATTTTATTGCTTACGTAACAAATAAAGATGTTAAAGAGCTTATTCGTTATAACAAT
CTGTCTGCACCTTATACCATCCATCCCGGACAGAGCCTTAAGTTATGGCGTCCTAGCTACAACGCTCCAGCGTATGGTAA
ATCAACGGTAGCGGTTGCAGCCGTCGCTGCGCCTGTTGCCGCATCCACAACTTTGTTGGCCTCAAGCAAACCTAAAACAT
CACCTCAAAAGAGTAAAAACTCTAAACCTGTGCCCGCTCAAACAACCACCAAAGTGGCGAAAAAAGATCCACAAAAGAAG
GTTGTACAATCCAAATCAAAGGAGTATGTTGGTTCTAAAGGTAAACAGAATGTTACACCGCCAACAAAACCAACGAGTAA
CAAAGTATCCAAATGGTTATGGCCAACGAAAGGGAGAGTAATTAAGAATTTCTCTGTAGGCGAACAAGGAAATAAAGGCA
TAGACATAGCAGGACAGCGAGGTCAGCCAATAGTATCTACTGCAGGGGGAACGGTTGTTTATTCGGGTAATGCATTACGA
GGCTACGGCAATCTAGTGATTGTGAAGCACAATGATAATTACTTAAGTGCATACGCGCATAACGACCGACTATTAGTATC
TGAAGGGCAAAGTGTGAAACCAGGGCAGAAGATTGCAACAATGGGAAGCTCTGGAGCCAGCAGTGTCAGGCTGCACTTTG
AGATTCGTTACCAAGGTAAATCAGTTAATCCAAAACGGTATTTACCTTAA

Upstream 100 bases:

>100_bases
TTCGCCACGGCGATGAGTTCTTATCGAGTGTTATCGAGATGGTGCGATTTGTACCTCTTGTACCTGGTGAGTTAGCTTAA
TAAAATTATTAATGGTGTAG

Downstream 100 bases:

>100_bases
ATACAATATGTAAAAATTACGTATTGTATGGAGTGACATAGTCATTTAGCGACATATGAAGTTGTAATGTCATGCTAATT
TCGCCAGGGGGAGGCGTTAT

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MDRKSMRSKVFKGSSLLLSCALVGCAANSPAPVSSLNKNYSSIDRGSYRGSYYEVKKGDTLYFIAYVTNKDVKELIRYNN
LSAPYTIHPGQSLKLWRPSYNAPAYGKSTVAVAAVAAPVAASTTLLASSKPKTSPQKSKNSKPVPAQTTTKVAKKDPQKK
VVQSKSKEYVGSKGKQNVTPPTKPTSNKVSKWLWPTKGRVIKNFSVGEQGNKGIDIAGQRGQPIVSTAGGTVVYSGNALR
GYGNLVIVKHNDNYLSAYAHNDRLLVSEGQSVKPGQKIATMGSSGASSVRLHFEIRYQGKSVNPKRYLP

Sequences:

>Translated_309_residues
MDRKSMRSKVFKGSSLLLSCALVGCAANSPAPVSSLNKNYSSIDRGSYRGSYYEVKKGDTLYFIAYVTNKDVKELIRYNN
LSAPYTIHPGQSLKLWRPSYNAPAYGKSTVAVAAVAAPVAASTTLLASSKPKTSPQKSKNSKPVPAQTTTKVAKKDPQKK
VVQSKSKEYVGSKGKQNVTPPTKPTSNKVSKWLWPTKGRVIKNFSVGEQGNKGIDIAGQRGQPIVSTAGGTVVYSGNALR
GYGNLVIVKHNDNYLSAYAHNDRLLVSEGQSVKPGQKIATMGSSGASSVRLHFEIRYQGKSVNPKRYLP
>Mature_309_residues
MDRKSMRSKVFKGSSLLLSCALVGCAANSPAPVSSLNKNYSSIDRGSYRGSYYEVKKGDTLYFIAYVTNKDVKELIRYNN
LSAPYTIHPGQSLKLWRPSYNAPAYGKSTVAVAAVAAPVAASTTLLASSKPKTSPQKSKNSKPVPAQTTTKVAKKDPQKK
VVQSKSKEYVGSKGKQNVTPPTKPTSNKVSKWLWPTKGRVIKNFSVGEQGNKGIDIAGQRGQPIVSTAGGTVVYSGNALR
GYGNLVIVKHNDNYLSAYAHNDRLLVSEGQSVKPGQKIATMGSSGASSVRLHFEIRYQGKSVNPKRYLP

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=277, Percent_Identity=47.6534296028881, Blast_Score=241, Evalue=5e-65,
Organism=Escherichia coli, GI87082174, Length=299, Percent_Identity=41.8060200668896, Blast_Score=207, Evalue=5e-55,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=38.3333333333333, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 33348; Mature: 33348

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRKSMRSKVFKGSSLLLSCALVGCAANSPAPVSSLNKNYSSIDRGSYRGSYYEVKKGDT
CCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHCCCHHHCCCCCCCCCEEEEECCCE
LYFIAYVTNKDVKELIRYNNLSAPYTIHPGQSLKLWRPSYNAPAYGKSTVAVAAVAAPVA
EEEEEEECCHHHHHHHHHCCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEHHHHHHHH
ASTTLLASSKPKTSPQKSKNSKPVPAQTTTKVAKKDPQKKVVQSKSKEYVGSKGKQNVTP
HCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
PTKPTSNKVSKWLWPTKGRVIKNFSVGEQGNKGIDIAGQRGQPIVSTAGGTVVYSGNALR
CCCCCCHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCEEEECCCEEEEECCEEE
GYGNLVIVKHNDNYLSAYAHNDRLLVSEGQSVKPGQKIATMGSSGASSVRLHFEIRYQGK
CCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCHHEEECCCCCCCEEEEEEEEEECCC
SVNPKRYLP
CCCCCCCCC
>Mature Secondary Structure
MDRKSMRSKVFKGSSLLLSCALVGCAANSPAPVSSLNKNYSSIDRGSYRGSYYEVKKGDT
CCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHCCCHHHCCCCCCCCCEEEEECCCE
LYFIAYVTNKDVKELIRYNNLSAPYTIHPGQSLKLWRPSYNAPAYGKSTVAVAAVAAPVA
EEEEEEECCHHHHHHHHHCCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEHHHHHHHH
ASTTLLASSKPKTSPQKSKNSKPVPAQTTTKVAKKDPQKKVVQSKSKEYVGSKGKQNVTP
HCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
PTKPTSNKVSKWLWPTKGRVIKNFSVGEQGNKGIDIAGQRGQPIVSTAGGTVVYSGNALR
CCCCCCHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCEEEECCCEEEEECCEEE
GYGNLVIVKHNDNYLSAYAHNDRLLVSEGQSVKPGQKIATMGSSGASSVRLHFEIRYQGK
CCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCHHEEECCCCCCCEEEEEEEEEECCC
SVNPKRYLP
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]