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The map label for this gene is ompU [H]

Identifier: 218710455

GI number: 218710455

Start: 2665838

End: 2666884

Strand: Direct

Name: ompU [H]

Synonym: VS_2494

Alternate gene names: 218710455

Gene position: 2665838-2666884 (Clockwise)

Preceding gene: 218710453

Following gene: 218710456

Centisome position: 80.8

GC content: 46.7

Gene sequence:

>1047_bases
ATGAACAAGACTATGATCGCGCTTGCTGTATCTGCTGCAGCTCTTGCTACTGGTGCTAACGCTTCAGAACTATACAACCA
AGACGGTACTTCTCTAGAAATGGGTGGCCGTGCGGAAGCTCGTCTTTCTATGAAAGATGGCAACGTACAAGACAACTCTC
GTATCCGTCTTAACTTCCTAGGTCAAGTTGAAATCCAAGACGGCCTATACGGTGTTGGTTTCTACGAAGGCGAATTCACA
ACTGCTGACAACGGTGGTCCTACAGACAGCGATAGCGACAGCCTAACTAACCGTTATGCTTACGCTGGACTTGGCGGTAC
ATTCGGTGAAGTGACTTACGGTAAAAATGACGGCGCTCTAGGCGTAATCACTGACTTTACCGATATCATGGCTTACCACG
GCAACTCTGCAGCAGACAAAATCAATGCTGCTGACCGTGCTGACAACATGCTTTCTTACAAAGGTCAATTCCAAGACCTA
AGTCTTAAAGCAAGCTACCGTTTTGCTGACCGTAACGACGACACTGCAAACAACGTAGGCTACACTGACAACGGTCAAGA
CGGCTACTCTCTATCTGGTATCTACGCAATCGGTGAAACTGGCGTTAAACTAGGTGCTGGTTACGCAGACCAAGATAAGA
ACAACGAATACATGCTTTCGGGCTCTTACACTATGGGCGACCTATACTTCGCTGGTGTATTCACTGACGGAGAAAAAGAT
TTTGACCGCCAGTACAACTCTTCAAACGCTTCAAGCATTGGTAGCAAGTTCACAGGTGTTCAAGACTACACTGGTTACGA
AGTAGCAGCCGCTTACACTCTAGGTCAAACTGTATTCTCAACCACATACAACAACGCAGAAACAGGTAGCGACACATCGG
CAGACAATATCGCTGTTGATGCAACGTACTACTTCAAGCCTAACTTCCGTGGTTACGTATCGTACAACTTCAACCTACTA
AGCGCTAGCGACAAGCTAGGTACTTCAACAGTTGGTACTAAAGGTGCTGAAGACGAGCTTGCTCTAGGTCTACGTTACGA
CTTCTAA

Upstream 100 bases:

>100_bases
TCTAAGCATGATTATGAAGCTTGATTAATACGAGCAATACACAAAAAGGATTCAAATCCTTGATAAATACCTTTATGGAC
AGTAATTAGGAATTAATAAC

Downstream 100 bases:

>100_bases
TTCTGATTATCTAATTGATTAATTAGTTAATTGAGAATCAAAACGCCCGCTCTATAGCGGGCGTTTTTTATATCTGTATA
CTGAAAACATCAGTCATCCA

Product: outer membrane protein OmpU

Products: NA

Alternate protein names: Porin ompU [H]

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MNKTMIALAVSAAALATGANASELYNQDGTSLEMGGRAEARLSMKDGNVQDNSRIRLNFLGQVEIQDGLYGVGFYEGEFT
TADNGGPTDSDSDSLTNRYAYAGLGGTFGEVTYGKNDGALGVITDFTDIMAYHGNSAADKINAADRADNMLSYKGQFQDL
SLKASYRFADRNDDTANNVGYTDNGQDGYSLSGIYAIGETGVKLGAGYADQDKNNEYMLSGSYTMGDLYFAGVFTDGEKD
FDRQYNSSNASSIGSKFTGVQDYTGYEVAAAYTLGQTVFSTTYNNAETGSDTSADNIAVDATYYFKPNFRGYVSYNFNLL
SASDKLGTSTVGTKGAEDELALGLRYDF

Sequences:

>Translated_348_residues
MNKTMIALAVSAAALATGANASELYNQDGTSLEMGGRAEARLSMKDGNVQDNSRIRLNFLGQVEIQDGLYGVGFYEGEFT
TADNGGPTDSDSDSLTNRYAYAGLGGTFGEVTYGKNDGALGVITDFTDIMAYHGNSAADKINAADRADNMLSYKGQFQDL
SLKASYRFADRNDDTANNVGYTDNGQDGYSLSGIYAIGETGVKLGAGYADQDKNNEYMLSGSYTMGDLYFAGVFTDGEKD
FDRQYNSSNASSIGSKFTGVQDYTGYEVAAAYTLGQTVFSTTYNNAETGSDTSADNIAVDATYYFKPNFRGYVSYNFNLL
SASDKLGTSTVGTKGAEDELALGLRYDF
>Mature_348_residues
MNKTMIALAVSAAALATGANASELYNQDGTSLEMGGRAEARLSMKDGNVQDNSRIRLNFLGQVEIQDGLYGVGFYEGEFT
TADNGGPTDSDSDSLTNRYAYAGLGGTFGEVTYGKNDGALGVITDFTDIMAYHGNSAADKINAADRADNMLSYKGQFQDL
SLKASYRFADRNDDTANNVGYTDNGQDGYSLSGIYAIGETGVKLGAGYADQDKNNEYMLSGSYTMGDLYFAGVFTDGEKD
FDRQYNSSNASSIGSKFTGVQDYTGYEVAAAYTLGQTVFSTTYNNAETGSDTSADNIAVDATYYFKPNFRGYVSYNFNLL
SASDKLGTSTVGTKGAEDELALGLRYDF

Specific function: Uptake Of Inorganic Phosphate, Phosphorylated Compounds, And Some Other Negatively Charged Solutes. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=372, Percent_Identity=27.6881720430108, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787641, Length=381, Percent_Identity=27.2965879265092, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787160, Length=385, Percent_Identity=24.4155844155844, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788544, Length=388, Percent_Identity=26.2886597938144, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: 794 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 37233; Mature: 37233

Theoretical pI: Translated: 4.03; Mature: 4.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTMIALAVSAAALATGANASELYNQDGTSLEMGGRAEARLSMKDGNVQDNSRIRLNFL
CCCEEEEEEEHHHHHHCCCCHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEEEE
GQVEIQDGLYGVGFYEGEFTTADNGGPTDSDSDSLTNRYAYAGLGGTFGEVTYGKNDGAL
EEEEECCCEEEEEEECCEEEECCCCCCCCCCCCHHHHEEEEECCCCCCCEEEECCCCCCE
GVITDFTDIMAYHGNSAADKINAADRADNMLSYKGQFQDLSLKASYRFADRNDDTANNVG
EEEECHHHHHHCCCCCHHHHCCCHHHHCCCEECCCCCEEEEEEEEEEECCCCCCCCCCCC
YTDNGQDGYSLSGIYAIGETGVKLGAGYADQDKNNEYMLSGSYTMGDLYFAGVFTDGEKD
CCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCEEEECCCEECCEEEEEEEECCCHH
FDRQYNSSNASSIGSKFTGVQDYTGYEVAAAYTLGQTVFSTTYNNAETGSDTSADNIAVD
HHHHCCCCCHHHHCCCCCCCCCCCCCEEEEEEHHHHHHEEECCCCCCCCCCCCCCCEEEE
ATYYFKPNFRGYVSYNFNLLSASDKLGTSTVGTKGAEDELALGLRYDF
EEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MNKTMIALAVSAAALATGANASELYNQDGTSLEMGGRAEARLSMKDGNVQDNSRIRLNFL
CCCEEEEEEEHHHHHHCCCCHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEEEE
GQVEIQDGLYGVGFYEGEFTTADNGGPTDSDSDSLTNRYAYAGLGGTFGEVTYGKNDGAL
EEEEECCCEEEEEEECCEEEECCCCCCCCCCCCHHHHEEEEECCCCCCCEEEECCCCCCE
GVITDFTDIMAYHGNSAADKINAADRADNMLSYKGQFQDLSLKASYRFADRNDDTANNVG
EEEECHHHHHHCCCCCHHHHCCCHHHHCCCEECCCCCEEEEEEEEEEECCCCCCCCCCCC
YTDNGQDGYSLSGIYAIGETGVKLGAGYADQDKNNEYMLSGSYTMGDLYFAGVFTDGEKD
CCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCEEEECCCEECCEEEEEEEECCCHH
FDRQYNSSNASSIGSKFTGVQDYTGYEVAAAYTLGQTVFSTTYNNAETGSDTSADNIAVD
HHHHCCCCCHHHHCCCCCCCCCCCCCEEEEEEHHHHHHEEECCCCCCCCCCCCCCCEEEE
ATYYFKPNFRGYVSYNFNLLSASDKLGTSTVGTKGAEDELALGLRYDF
EEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA