Definition Vibrio splendidus LGP32 chromosome 1, complete genome.
Accession NC_011753
Length 3,299,303

Click here to switch to the map view.

The map label for this gene is 218710416

Identifier: 218710416

GI number: 218710416

Start: 2621734

End: 2621946

Strand: Direct

Name: 218710416

Synonym: VS_2453

Alternate gene names: NA

Gene position: 2621734-2621946 (Clockwise)

Preceding gene: 218710415

Following gene: 218710420

Centisome position: 79.46

GC content: 38.5

Gene sequence:

>213_bases
ATGACACAAGACAATAATCCACTTCACGGTATCACTCTACAGAAGCTACTGACTGAATTGGTTGAACATTACGGTTGGGA
AGAGTTGAGTTACATGGTAAACATCAACTGCTTTAAAAAAGACCCGAGCATTAAATCAAGCTTAAAATTTTTGCGTAAAA
CAGATTGGGCACGCACCAAGGTAGAGCAGATTTACATCGACTTAAAACGTTAG

Upstream 100 bases:

>100_bases
AGAACTAACTATTATCGAGACAGATTACCAGCTTAAATGGTCTGATAATTCATAAAGCGAAACTGGTATACTTAGCTCAA
ATAAATGGCGAGAACATCTC

Downstream 100 bases:

>100_bases
TCTCTCCCTGCTTTATCAGTCCCGTGTTGATTAAATACGGGACAACCCCTGAGTCTACTTTTTAGGGGCTACATCAGCAC
CTCGCACCTCGCACCTCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MTQDNNPLHGITLQKLLTELVEHYGWEELSYMVNINCFKKDPSIKSSLKFLRKTDWARTKVEQIYIDLKR

Sequences:

>Translated_70_residues
MTQDNNPLHGITLQKLLTELVEHYGWEELSYMVNINCFKKDPSIKSSLKFLRKTDWARTKVEQIYIDLKR
>Mature_69_residues
TQDNNPLHGITLQKLLTELVEHYGWEELSYMVNINCFKKDPSIKSSLKFLRKTDWARTKVEQIYIDLKR

Specific function: Unknown

COG id: COG4628

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8370; Mature: 8239

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQDNNPLHGITLQKLLTELVEHYGWEELSYMVNINCFKKDPSIKSSLKFLRKTDWARTK
CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHEEEEEEEECCCCCHHHHHHHHHHCCHHHHH
VEQIYIDLKR
HHHHEEEECC
>Mature Secondary Structure 
TQDNNPLHGITLQKLLTELVEHYGWEELSYMVNINCFKKDPSIKSSLKFLRKTDWARTK
CCCCCCCCCHHHHHHHHHHHHHCCHHHHHEEEEEEEECCCCCHHHHHHHHHHCCHHHHH
VEQIYIDLKR
HHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA