| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is 218710265
Identifier: 218710265
GI number: 218710265
Start: 2469569
End: 2469901
Strand: Direct
Name: 218710265
Synonym: VS_2298
Alternate gene names: NA
Gene position: 2469569-2469901 (Clockwise)
Preceding gene: 218710264
Following gene: 218710267
Centisome position: 74.85
GC content: 45.95
Gene sequence:
>333_bases ATGAAAAAGGAATTAGTCGCTTTAGCTATGACAGGCATATTAGGCGGGTGCACGACACCGACAACAGTCCCACATAGCGA ATCTGACCAAGTACAAATGGATTACCACGGACTGATTGATATCAACAAGTGCGAATATAAAGGGGAAGTCACCGGCAGCG AAGGCCACTGGTATAGTTACCTGTTTTACCCGAACGACACTCTAATTCAAGGCGCAATGAATGAGCTAAAGTCCAATGCT ATTGGATTAGGTGCGGACACTGTAATTTTCACACTTCCCCAAGATTTTGCGACTTCCGTAACCATGTTGGGCACCGCTTA TCGGTGTCGCTAA
Upstream 100 bases:
>100_bases TGAAACAACATCAAATCACGCCAACAAATTGCCGTGGTTACTATTGATCGCAAGCTGGGTAGGTTTCGCGATTTATTTGA TGAAATAGCAGGATAAATGT
Downstream 100 bases:
>100_bases TTCGACTTATCGGTAATCGGTAATCGGTAATCGGTAATCGGTAATCGGTAAGGAGAAGAAAGAAGAAAGAAGAAAGAAGA AAGCCAGCTTTCGCTGGCTT
Product: putative outer membrane lipoprotein
Products: NA
Alternate protein names: Lipoprotein; Outermembrane Lipoprotein; Ubiquinone Biosynthesis Protein AarF
Number of amino acids: Translated: 110; Mature: 110
Protein sequence:
>110_residues MKKELVALAMTGILGGCTTPTTVPHSESDQVQMDYHGLIDINKCEYKGEVTGSEGHWYSYLFYPNDTLIQGAMNELKSNA IGLGADTVIFTLPQDFATSVTMLGTAYRCR
Sequences:
>Translated_110_residues MKKELVALAMTGILGGCTTPTTVPHSESDQVQMDYHGLIDINKCEYKGEVTGSEGHWYSYLFYPNDTLIQGAMNELKSNA IGLGADTVIFTLPQDFATSVTMLGTAYRCR >Mature_110_residues MKKELVALAMTGILGGCTTPTTVPHSESDQVQMDYHGLIDINKCEYKGEVTGSEGHWYSYLFYPNDTLIQGAMNELKSNA IGLGADTVIFTLPQDFATSVTMLGTAYRCR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12044; Mature: 12044
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKELVALAMTGILGGCTTPTTVPHSESDQVQMDYHGLIDINKCEYKGEVTGSEGHWYSY CCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCEEECCCCCEEEE LFYPNDTLIQGAMNELKSNAIGLGADTVIFTLPQDFATSVTMLGTAYRCR EEECCCHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCEEEECC >Mature Secondary Structure MKKELVALAMTGILGGCTTPTTVPHSESDQVQMDYHGLIDINKCEYKGEVTGSEGHWYSY CCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCEEECCCCCEEEE LFYPNDTLIQGAMNELKSNAIGLGADTVIFTLPQDFATSVTMLGTAYRCR EEECCCHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA