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The map label for this gene is ybaV [C]

Identifier: 218710169

GI number: 218710169

Start: 2347941

End: 2348240

Strand: Reverse

Name: ybaV [C]

Synonym: VS_2199

Alternate gene names: 218710169

Gene position: 2348240-2347941 (Counterclockwise)

Preceding gene: 218710170

Following gene: 218710167

Centisome position: 71.17

GC content: 44.0

Gene sequence:

>300_bases
ATGCGCACGATATATTCAACATTATTTCTTACATTTCTGATTCTGTTAAGCCCCGCAGCGTATGCAGACAGCCCAACTAA
GGCAGAGCTTTACGATGGCATTGAGATTACGGTCAATATCAATACCGCGACAGCTGAAGAGCTGTCAGCGCTATTGGTTG
GTGTTGGGGATAAGAAAGCTCAAGAGATCGTCGATTACAGGGATCAAAACGGGGCATTTACGACTGCTGATGATTTGGTG
AGTGTGAAAGGGATAGGTGAAGCGACAGTTAAAAAGAACCGCGAAAGAATTCAACTTTAA

Upstream 100 bases:

>100_bases
AAGCGGGTCACTTAGGTGACCCGCTTTATTTTTGTCTGGTGAGTGTTTTATCTAGCGCAGCAAATGCATAAGTTACGTTT
TTTGAACAAAGGAACGGTTT

Downstream 100 bases:

>100_bases
TCCGTTTGTCTACTTGTTAGAAATGAAGCGATAGATATGAAGCCTCCGGCCAATGCACCTGCTAGGTGGGCTTCAATCGC
GACACGAGCATTAATCAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MRTIYSTLFLTFLILLSPAAYADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTTADDLV
SVKGIGEATVKKNRERIQL

Sequences:

>Translated_99_residues
MRTIYSTLFLTFLILLSPAAYADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTTADDLV
SVKGIGEATVKKNRERIQL
>Mature_99_residues
MRTIYSTLFLTFLILLSPAAYADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTTADDLV
SVKGIGEATVKKNRERIQL

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=77, Percent_Identity=44.1558441558442, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10796; Mature: 10796

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTIYSTLFLTFLILLSPAAYADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCEEEEEEECCCCHHHHHHHHHCCCCHHH
QEIVDYRDQNGAFTTADDLVSVKGIGEATVKKNRERIQL
HHHHHHCCCCCCEECHHHEEEECCCCHHHHHCCHHHCCC
>Mature Secondary Structure
MRTIYSTLFLTFLILLSPAAYADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCEEEEEEECCCCHHHHHHHHHCCCCHHH
QEIVDYRDQNGAFTTADDLVSVKGIGEATVKKNRERIQL
HHHHHHCCCCCCEECHHHEEEECCCCHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]