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The map label for this gene is rlpA [H]

Identifier: 218710103

GI number: 218710103

Start: 2284123

End: 2284575

Strand: Reverse

Name: rlpA [H]

Synonym: VS_2124

Alternate gene names: 218710103

Gene position: 2284575-2284123 (Counterclockwise)

Preceding gene: 218710104

Following gene: 218710100

Centisome position: 69.24

GC content: 41.72

Gene sequence:

>453_bases
ATGCAGAGATTAGCGTTCCCAAATCACATGAAAAAACGACATATCATATTTACCGCTCTTATTCTTATGATATTAGCTGG
ATGCACCTCAACGTCGGCTGTCGGCAGTTCTAAAACAAAGGACTATGCCAAGTCACATGCTCTTGTGGGTAAAGCTTCTT
GGTATGGCGATAAATTCCATGGAAAACTCACAGCAAGTGGTGAGACGTATAATATGAATGCTTATACGGCGGCTCATAAA
ACCTTGCCCTTTGGGACGATCGTGAGAGTGACTAACACTGCCAATAATAAGTCTGTCGAAGTTAAAATTAACGATCGAGG
CCCTTACGTAAAAGGCCGAGTGATTGACCTCTCGCATAAGGCATTTGCAAAAATCGGCAACGTTAAACAAGGTACAGTGC
CTGTCAAAATTGAGATTGTTGATGACCGTAATACCTTTAGGTATAAGCACTAA

Upstream 100 bases:

>100_bases
CATGAAAACATTGCGCCATCATACCGAATGGTAGCCTTGATTGAGTTGTGACTATACTCAGCTCAATATTGCTAACTAAC
AACAACGAAAATAGAGATAC

Downstream 100 bases:

>100_bases
CCAACTTCAAGTATTCCTTTGAATTGTCAACCACTACTATAAACGGTACCAAGAGCTAGACCGGTACTGGTGGTTAGTAA
TCAAAAATGAAGTTGTATTT

Product: lipoprotein A family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MQRLAFPNHMKKRHIIFTALILMILAGCTSTSAVGSSKTKDYAKSHALVGKASWYGDKFHGKLTASGETYNMNAYTAAHK
TLPFGTIVRVTNTANNKSVEVKINDRGPYVKGRVIDLSHKAFAKIGNVKQGTVPVKIEIVDDRNTFRYKH

Sequences:

>Translated_150_residues
MQRLAFPNHMKKRHIIFTALILMILAGCTSTSAVGSSKTKDYAKSHALVGKASWYGDKFHGKLTASGETYNMNAYTAAHK
TLPFGTIVRVTNTANNKSVEVKINDRGPYVKGRVIDLSHKAFAKIGNVKQGTVPVKIEIVDDRNTFRYKH
>Mature_150_residues
MQRLAFPNHMKKRHIIFTALILMILAGCTSTSAVGSSKTKDYAKSHALVGKASWYGDKFHGKLTASGETYNMNAYTAAHK
TLPFGTIVRVTNTANNKSVEVKINDRGPYVKGRVIDLSHKAFAKIGNVKQGTVPVKIEIVDDRNTFRYKH

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=76, Percent_Identity=46.0526315789474, Blast_Score=71, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 16623; Mature: 16623

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRLAFPNHMKKRHIIFTALILMILAGCTSTSAVGSSKTKDYAKSHALVGKASWYGDKFH
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHEEEECCCCCCCCCC
GKLTASGETYNMNAYTAAHKTLPFGTIVRVTNTANNKSVEVKINDRGPYVKGRVIDLSHK
CEEEECCCEEECCEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEECHH
AFAKIGNVKQGTVPVKIEIVDDRNTFRYKH
HHHHHCCCCCCCEEEEEEEEECCCCEEECC
>Mature Secondary Structure
MQRLAFPNHMKKRHIIFTALILMILAGCTSTSAVGSSKTKDYAKSHALVGKASWYGDKFH
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHEEEECCCCCCCCCC
GKLTASGETYNMNAYTAAHKTLPFGTIVRVTNTANNKSVEVKINDRGPYVKGRVIDLSHK
CEEEECCCEEECCEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEECHH
AFAKIGNVKQGTVPVKIEIVDDRNTFRYKH
HHHHHCCCCCCCEEEEEEEEECCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]