Click here to switch to the map view.

The map label for this gene is ycfF [C]

Identifier: 218710059

GI number: 218710059

Start: 2231700

End: 2232050

Strand: Reverse

Name: ycfF [C]

Synonym: VS_2079

Alternate gene names: 218710059

Gene position: 2232050-2231700 (Counterclockwise)

Preceding gene: 218710062

Following gene: 218710058

Centisome position: 67.65

GC content: 40.74

Gene sequence:

>351_bases
ATGGCTGAAGAAACCATTTTTAGTAAGATCATCAATAAAGAAATCCCAGCAGATCTACTATACCAAGACGATTTAGTAAC
CGCATTTCGCGATATTAACCCTCGTGCTCCTAGTCATATTCTAATTATTCCTAACAAGCTGATTCCAACAACGAATGATG
TTGAAACGGAAGATGAAGCAATGATGGGACGTATGTTTACTGTTGCTCGTAAGTTAGCAAAAGAAGAAGGCATTGCAGAA
GATGGCTATCGTCTTATTGTGAACTGCAATTCTCACGGTGGCCAAGAGGTTTACCATATTCACATGCATTTGGTTGGTGG
CCGCCCGCTTGGTCCGCTTTTAATGAGTTAA

Upstream 100 bases:

>100_bases
CGGTGTTTTTTATTATGCTTTAAAGCAGGTTTATTGTGGTTTGATGCGGCATAGCGCATACTCAAAGCATTAAAAAATAA
ATGTTTTATCGGAGAGACAC

Downstream 100 bases:

>100_bases
TTAAAAGGCTAATAAGCTAACGAAACAGTTAATGATCTCGTTAATACAAGTTAATGGTTAATTAACATAAACAGCGAGTT
GGAAAATTTGTTGTTTGTAT

Product: Hit family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MAEETIFSKIINKEIPADLLYQDDLVTAFRDINPRAPSHILIIPNKLIPTTNDVETEDEAMMGRMFTVARKLAKEEGIAE
DGYRLIVNCNSHGGQEVYHIHMHLVGGRPLGPLLMS

Sequences:

>Translated_116_residues
MAEETIFSKIINKEIPADLLYQDDLVTAFRDINPRAPSHILIIPNKLIPTTNDVETEDEAMMGRMFTVARKLAKEEGIAE
DGYRLIVNCNSHGGQEVYHIHMHLVGGRPLGPLLMS
>Mature_115_residues
AEETIFSKIINKEIPADLLYQDDLVTAFRDINPRAPSHILIIPNKLIPTTNDVETEDEAMMGRMFTVARKLAKEEGIAED
GYRLIVNCNSHGGQEVYHIHMHLVGGRPLGPLLMS

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI14211923, Length=109, Percent_Identity=48.6238532110092, Blast_Score=120, Evalue=2e-28,
Organism=Homo sapiens, GI4885413, Length=107, Percent_Identity=47.6635514018692, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI1787346, Length=114, Percent_Identity=77.1929824561403, Blast_Score=171, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI17506713, Length=109, Percent_Identity=44.0366972477064, Blast_Score=109, Evalue=3e-25,
Organism=Drosophila melanogaster, GI28574010, Length=109, Percent_Identity=46.7889908256881, Blast_Score=116, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24581222, Length=109, Percent_Identity=46.7889908256881, Blast_Score=116, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 12998; Mature: 12867

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEETIFSKIINKEIPADLLYQDDLVTAFRDINPRAPSHILIIPNKLIPTTNDVETEDEA
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHH
MMGRMFTVARKLAKEEGIAEDGYRLIVNCNSHGGQEVYHIHMHLVGGRPLGPLLMS
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
AEETIFSKIINKEIPADLLYQDDLVTAFRDINPRAPSHILIIPNKLIPTTNDVETEDEA
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHH
MMGRMFTVARKLAKEEGIAEDGYRLIVNCNSHGGQEVYHIHMHLVGGRPLGPLLMS
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]