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The map label for this gene is ycaR [C]

Identifier: 218710040

GI number: 218710040

Start: 2210004

End: 2210183

Strand: Reverse

Name: ycaR [C]

Synonym: VS_2060

Alternate gene names: 218710040

Gene position: 2210183-2210004 (Counterclockwise)

Preceding gene: 218710041

Following gene: 218710039

Centisome position: 66.99

GC content: 41.11

Gene sequence:

>180_bases
ATGGATCACCGTCTACTTGAGATCGTTGCTTGCCCTGTATGTAAAGGTAAACTAACTTTTGACAAGGATAAGCAAGAGCT
TGTTTGTAAAATTGATCGCCTTGCTTACCCAATTAAAGAGGGTATTCCTGTTCTTTTGGAACCTGAAGCTCGCACCGTTT
CAATGGATGAGGGTAAGTAA

Upstream 100 bases:

>100_bases
TATGCGCAAGATAACTGGTGGTATCTTCCAGTTTCTGCGCAGTTTGATGAAGATTCGCAACAGCAAATTTTAAAAAGAAT
AAAAGAGGTTATGGAATACT

Downstream 100 bases:

>100_bases
TGTCTTATACGGTTGTTATACCTGCAAGATACCAATCGAGCCGTTTACCAGGGAAGCCACTTGCTGACATTGGTGGAAAG
CCGATGATTCAATGGGTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 59; Mature: 59

Protein sequence:

>59_residues
MDHRLLEIVACPVCKGKLTFDKDKQELVCKIDRLAYPIKEGIPVLLEPEARTVSMDEGK

Sequences:

>Translated_59_residues
MDHRLLEIVACPVCKGKLTFDKDKQELVCKIDRLAYPIKEGIPVLLEPEARTVSMDEGK
>Mature_59_residues
MDHRLLEIVACPVCKGKLTFDKDKQELVCKIDRLAYPIKEGIPVLLEPEARTVSMDEGK

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family

Homologues:

Organism=Escherichia coli, GI1787146, Length=59, Percent_Identity=66.1016949152542, Blast_Score=93, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2060_VIBSL (B7VH36)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002417661.1
- ProteinModelPortal:   B7VH36
- SMR:   B7VH36
- GeneID:   7161615
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_2060
- HOGENOM:   HBG713593
- OMA:   NELVSEK
- ProtClustDB:   CLSK874577
- HAMAP:   MF_01187
- InterPro:   IPR005651

Pfam domain/function: PF03966 Trm112p

EC number: NA

Molecular weight: Translated: 6684; Mature: 6684

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHRLLEIVACPVCKGKLTFDKDKQELVCKIDRLAYPIKEGIPVLLEPEARTVSMDEGK
CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHCCCCEEECCCCCEEECCCCC
>Mature Secondary Structure
MDHRLLEIVACPVCKGKLTFDKDKQELVCKIDRLAYPIKEGIPVLLEPEARTVSMDEGK
CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHCCCCEEECCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA