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The map label for this gene is yciM [H]

Identifier: 218710034

GI number: 218710034

Start: 2204526

End: 2205704

Strand: Reverse

Name: yciM [H]

Synonym: VS_2054

Alternate gene names: 218710034

Gene position: 2205704-2204526 (Counterclockwise)

Preceding gene: 218710035

Following gene: 218710033

Centisome position: 66.85

GC content: 44.44

Gene sequence:

>1179_bases
TTGATGTTAGAGTTACTGTTCTTACTTTTGCCCATCGCAGCCGCTTATGGTTGGTATATGGGTAATCGTAATGCTCAGCA
AGAAAAACAAAAGCAATCACACCAGATCTCCCGCCAATACGTGACGGGTTTGAACCTATTACTGTCAGACCAATCTGACA
AAGCGGTTGATCACTTCATTGAGTTACTTCAAGTAGACAATGAAACCATCGATACTCACTTGGCTTTGGGCAACTTGTTC
CGCTCAAGAGGCGAAGTCGACCGCGCTATTCGTATTCACCAAAATCTTATCTCTCGGTCTGGGCTTACCCTCGATCAAAA
AAACCTCGCATTGCAACAATTAGCTAAAGACTATACGGTCTCAGGCTTTCTTGATCGCGCAGAGAAAATTTTTGAACAGC
TTGTAGAAGAGCCTGATCATAAAGAAGGCGCTTTACAGCAGTTGGTTGCCATTTATCAGCAAACGCGTGAGTGGAATAAA
GCGATTCATTACGGGAATATCTTAGTTAAGCTGAGCAAGAAGAAAATGAAGACGCGTGCGATGGTTGCACACTTCTGGTG
TGAGCTTGCGATGCAAGAACAAGCCGACGGCAACCGCCCTAAAGCGCTTCAGCACTTCAAGAAGGCCCTTTCAGAAGACC
CTAAATGTGTTCGAGCTAGTATTGCTTTAGGAAAATTCTATTTAGCCAATGAAGATTATCACAAGACAATTACTTATTTA
GAGTCAGTTCTCGAGCAAGATATCGACTTCATTAGTGAAGTCCTGCCAACGCTTGCTGAGTGTTACCACAAACTTGGACA
AGAAGCGCAGTTGGTCGAGTTCCTTAAAGCGTGTATTCAGAAGAAAGCCGGTGTTTCCGCTGAGTTGATGCTGGCTCAAC
TCGTTGCCGACCATGAAGATGTTGGCTCTGCTCAAGAGCTACTGACAAAGCAGCTTGTTAAAAACCCAACCATGAAAGGT
TTTTATCGATTAATTGATTATCACCTAGAGGAAGCGGAAGAAGGTAGAGCCAAAGACAGCTTAACAACGCTTCAATCTAT
GGTTGGTGAACAACTCAAGGTTAAGCCTCATTACCGATGCCGTCAGTGTGGTTTCTCAACTCACTCAATGTATTGGCACT
GCCCTTCATGTAAGGGGTGGGGAACGATCAAGCCTATTCGTGGGCTTGATGGTGAATAG

Upstream 100 bases:

>100_bases
TATGCACATGCGATCTCAACTAAAAATTCATCGCTTGAAGAAGCAACTCAATAAGCAATCAAAGCAGGTCGCTGCTGAAA
CTAAAGCTTAAAGGCCATAT

Downstream 100 bases:

>100_bases
ATTTGTGGTCATTTTAAGACCAAATTATTAATTGCAGCTTTCGGGCTGCATTTTTATGACTGTTATTTATGGCCTGATTG
GTATAAATATTTTGTAGAAA

Product: tetratricopeptide repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MMLELLFLLLPIAAAYGWYMGNRNAQQEKQKQSHQISRQYVTGLNLLLSDQSDKAVDHFIELLQVDNETIDTHLALGNLF
RSRGEVDRAIRIHQNLISRSGLTLDQKNLALQQLAKDYTVSGFLDRAEKIFEQLVEEPDHKEGALQQLVAIYQQTREWNK
AIHYGNILVKLSKKKMKTRAMVAHFWCELAMQEQADGNRPKALQHFKKALSEDPKCVRASIALGKFYLANEDYHKTITYL
ESVLEQDIDFISEVLPTLAECYHKLGQEAQLVEFLKACIQKKAGVSAELMLAQLVADHEDVGSAQELLTKQLVKNPTMKG
FYRLIDYHLEEAEEGRAKDSLTTLQSMVGEQLKVKPHYRCRQCGFSTHSMYWHCPSCKGWGTIKPIRGLDGE

Sequences:

>Translated_392_residues
MMLELLFLLLPIAAAYGWYMGNRNAQQEKQKQSHQISRQYVTGLNLLLSDQSDKAVDHFIELLQVDNETIDTHLALGNLF
RSRGEVDRAIRIHQNLISRSGLTLDQKNLALQQLAKDYTVSGFLDRAEKIFEQLVEEPDHKEGALQQLVAIYQQTREWNK
AIHYGNILVKLSKKKMKTRAMVAHFWCELAMQEQADGNRPKALQHFKKALSEDPKCVRASIALGKFYLANEDYHKTITYL
ESVLEQDIDFISEVLPTLAECYHKLGQEAQLVEFLKACIQKKAGVSAELMLAQLVADHEDVGSAQELLTKQLVKNPTMKG
FYRLIDYHLEEAEEGRAKDSLTTLQSMVGEQLKVKPHYRCRQCGFSTHSMYWHCPSCKGWGTIKPIRGLDGE
>Mature_392_residues
MMLELLFLLLPIAAAYGWYMGNRNAQQEKQKQSHQISRQYVTGLNLLLSDQSDKAVDHFIELLQVDNETIDTHLALGNLF
RSRGEVDRAIRIHQNLISRSGLTLDQKNLALQQLAKDYTVSGFLDRAEKIFEQLVEEPDHKEGALQQLVAIYQQTREWNK
AIHYGNILVKLSKKKMKTRAMVAHFWCELAMQEQADGNRPKALQHFKKALSEDPKCVRASIALGKFYLANEDYHKTITYL
ESVLEQDIDFISEVLPTLAECYHKLGQEAQLVEFLKACIQKKAGVSAELMLAQLVADHEDVGSAQELLTKQLVKNPTMKG
FYRLIDYHLEEAEEGRAKDSLTTLQSMVGEQLKVKPHYRCRQCGFSTHSMYWHCPSCKGWGTIKPIRGLDGE

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=381, Percent_Identity=51.7060367454068, Blast_Score=431, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44779; Mature: 44779

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLELLFLLLPIAAAYGWYMGNRNAQQEKQKQSHQISRQYVTGLNLLLSDQSDKAVDHFI
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
ELLQVDNETIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTLDQKNLALQQLAKDYTV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
SGFLDRAEKIFEQLVEEPDHKEGALQQLVAIYQQTREWNKAIHYGNILVKLSKKKMKTRA
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHH
MVAHFWCELAMQEQADGNRPKALQHFKKALSEDPKCVRASIALGKFYLANEDYHKTITYL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
ESVLEQDIDFISEVLPTLAECYHKLGQEAQLVEFLKACIQKKAGVSAELMLAQLVADHED
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHC
VGSAQELLTKQLVKNPTMKGFYRLIDYHLEEAEEGRAKDSLTTLQSMVGEQLKVKPHYRC
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHCCCCCCHHH
RQCGFSTHSMYWHCPSCKGWGTIKPIRGLDGE
HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMLELLFLLLPIAAAYGWYMGNRNAQQEKQKQSHQISRQYVTGLNLLLSDQSDKAVDHFI
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
ELLQVDNETIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTLDQKNLALQQLAKDYTV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
SGFLDRAEKIFEQLVEEPDHKEGALQQLVAIYQQTREWNKAIHYGNILVKLSKKKMKTRA
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHH
MVAHFWCELAMQEQADGNRPKALQHFKKALSEDPKCVRASIALGKFYLANEDYHKTITYL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
ESVLEQDIDFISEVLPTLAECYHKLGQEAQLVEFLKACIQKKAGVSAELMLAQLVADHED
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHC
VGSAQELLTKQLVKNPTMKGFYRLIDYHLEEAEEGRAKDSLTTLQSMVGEQLKVKPHYRC
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHCCCCCCHHH
RQCGFSTHSMYWHCPSCKGWGTIKPIRGLDGE
HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]