Click here to switch to the map view.

The map label for this gene is ybbM [C]

Identifier: 218709987

GI number: 218709987

Start: 2153857

End: 2154651

Strand: Direct

Name: ybbM [C]

Synonym: VS_2006

Alternate gene names: 218709987

Gene position: 2153857-2154651 (Clockwise)

Preceding gene: 218709983

Following gene: 218709991

Centisome position: 65.28

GC content: 42.77

Gene sequence:

>795_bases
ATGCAAGACGTTATTGATATATCTTGGTGGCAGTTATTGTTCTTCAGCTCACTTCTCTTGCTACCCATTACCATCAACTA
CAAGTTAAAACTCGGCCTTGGCAAAGAGGCTTCTGTCAGCATAATCCGTATGGTTGTTCAGCTATTTCTAGTGGGACTTT
ACCTAGAATACTTGTTCACCTTAAATAGCTTATGGGTCAATTTACTGTGGCTATTTGCAATGATCATCGTTGGGGCAAGC
TCAATTGTTGAAAAATCTAGGCTCTCCAAAAACCTACTTTTAGGTCCTATAGCCGTTAGCCTTGCTGTAACTTGTGTACC
TATTGTCTTGTTTATCTGCTTTTTCATCATTAAACCGACACCTGTTTTTAACGCACAGTACCTTATCCCTATTGCAGGGA
TGCTGTTAGGTAATAGCTTAAGCAGTAATATCGTGGCATTGCAGAACTTGTTTGGGGCTTTTGAAACGCAGAAATCAGAG
TACGAAGCGGCTATCGCTTTGGGCGCATCTCCTTCCTATGCAGCCGCGCCTTTTGTTCGTAATGCGATACAGAAGGCGAT
GTCACCAATTATGGCCTCTATGGCAACTACAGGCTTAGTCACGCTACCGGGAATGATGACAGGACAGATCTTAGGAGGTG
CATCACCGATGATTGCGATTAAGTATCAGTTGATGATCATGTTAGCTATCTTCGTGATGATGAGCTGCTCTTTAGCACTT
GCACTTCACCTCTCATTGAAGACATCTCTAACTAAAGAAGGCCGAGTTCTAGTGCAAATACAGCCTTCGAAATAG

Upstream 100 bases:

>100_bases
TTGTTAAATGATTGATCATTTTTAGAATTGGTGACTTTACAGTTGAAATGCATCATTTGGCACTTTCAGATATGATGGAG
ACCACTTAAAAGGAATCATT

Downstream 100 bases:

>100_bases
CCACCCCACTCCACTTAGATCTGGTTACTCACTGAATTTGAGACAGGTTATCCACAGAAATTGTGGATAACCAAATCAAT
ATAGATCCTTTTTTGTCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MQDVIDISWWQLLFFSSLLLLPITINYKLKLGLGKEASVSIIRMVVQLFLVGLYLEYLFTLNSLWVNLLWLFAMIIVGAS
SIVEKSRLSKNLLLGPIAVSLAVTCVPIVLFICFFIIKPTPVFNAQYLIPIAGMLLGNSLSSNIVALQNLFGAFETQKSE
YEAAIALGASPSYAAAPFVRNAIQKAMSPIMASMATTGLVTLPGMMTGQILGGASPMIAIKYQLMIMLAIFVMMSCSLAL
ALHLSLKTSLTKEGRVLVQIQPSK

Sequences:

>Translated_264_residues
MQDVIDISWWQLLFFSSLLLLPITINYKLKLGLGKEASVSIIRMVVQLFLVGLYLEYLFTLNSLWVNLLWLFAMIIVGAS
SIVEKSRLSKNLLLGPIAVSLAVTCVPIVLFICFFIIKPTPVFNAQYLIPIAGMLLGNSLSSNIVALQNLFGAFETQKSE
YEAAIALGASPSYAAAPFVRNAIQKAMSPIMASMATTGLVTLPGMMTGQILGGASPMIAIKYQLMIMLAIFVMMSCSLAL
ALHLSLKTSLTKEGRVLVQIQPSK
>Mature_264_residues
MQDVIDISWWQLLFFSSLLLLPITINYKLKLGLGKEASVSIIRMVVQLFLVGLYLEYLFTLNSLWVNLLWLFAMIIVGAS
SIVEKSRLSKNLLLGPIAVSLAVTCVPIVLFICFFIIKPTPVFNAQYLIPIAGMLLGNSLSSNIVALQNLFGAFETQKSE
YEAAIALGASPSYAAAPFVRNAIQKAMSPIMASMATTGLVTLPGMMTGQILGGASPMIAIKYQLMIMLAIFVMMSCSLAL
ALHLSLKTSLTKEGRVLVQIQPSK

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=242, Percent_Identity=30.1652892561983, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 28727; Mature: 28727

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDVIDISWWQLLFFSSLLLLPITINYKLKLGLGKEASVSIIRMVVQLFLVGLYLEYLFT
CCCCHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LNSLWVNLLWLFAMIIVGASSIVEKSRLSKNLLLGPIAVSLAVTCVPIVLFICFFIIKPT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PVFNAQYLIPIAGMLLGNSLSSNIVALQNLFGAFETQKSEYEAAIALGASPSYAAAPFVR
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHEEECCCCCCHHHHHHH
NAIQKAMSPIMASMATTGLVTLPGMMTGQILGGASPMIAIKYQLMIMLAIFVMMSCSLAL
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALHLSLKTSLTKEGRVLVQIQPSK
HHHHHHHHHCCCCCEEEEEEECCC
>Mature Secondary Structure
MQDVIDISWWQLLFFSSLLLLPITINYKLKLGLGKEASVSIIRMVVQLFLVGLYLEYLFT
CCCCHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LNSLWVNLLWLFAMIIVGASSIVEKSRLSKNLLLGPIAVSLAVTCVPIVLFICFFIIKPT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PVFNAQYLIPIAGMLLGNSLSSNIVALQNLFGAFETQKSEYEAAIALGASPSYAAAPFVR
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHEEECCCCCCHHHHHHH
NAIQKAMSPIMASMATTGLVTLPGMMTGQILGGASPMIAIKYQLMIMLAIFVMMSCSLAL
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALHLSLKTSLTKEGRVLVQIQPSK
HHHHHHHHHCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]