Click here to switch to the map view.

The map label for this gene is pspC [H]

Identifier: 218709970

GI number: 218709970

Start: 2137431

End: 2137847

Strand: Reverse

Name: pspC [H]

Synonym: VS_1989

Alternate gene names: 218709970

Gene position: 2137847-2137431 (Counterclockwise)

Preceding gene: 218709971

Following gene: 218709969

Centisome position: 64.8

GC content: 43.65

Gene sequence:

>417_bases
ATGCGGAGTCACCTAACTGGAGACGAAACTATGAGTAGAGAACTGTATCGCGATCCGATTAACGGTAAATTGTCTGGCGT
GTGTGCCGGATTAGCGAACTATTTTGGCCTTGAAGTTTGGTTGGTTCGTATCTTAGTGATCTCAGCCGCACTGCTAGGTG
GTAGCTTTTTGGTGTTATTAGCGTATTTAGCTTTGACATTTATGCTTGAAAAACAACCACCTCAATATGTCGATCAGATG
AAAGCCAAACAAGAGCACACACTCAAGCAAAAACCCTGGGAAAAAGGGCAAACAGCAGAGTCTTTGTTGGGCACTTTAGA
GGGTGATTTCCAGACGTTAGAGACCAGTGTACGCAATATGGAAGCTTATGTGACTTCGGACACTTTTAAAGTCGACCGTG
CATTTAAGAACATGTAG

Upstream 100 bases:

>100_bases
AGCAATGGTCTTTCAGAAACGGATCTTCAGCGTCTGCATAAGCTTTCTGAGCAAGCTGAGTCGATGCAAGACCGAGTGAA
AACGTTAGAAAAAATACTGG

Downstream 100 bases:

>100_bases
TGGTTAAGCCTTAAAAAGATTAGATAACGGTTTAGGAAAATTTATCCCAAGCCGTTATTTTTTTTAATAATTTTGTCTAA
ATAAATCTTACGATAACTGG

Product: phage shock protein C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MRSHLTGDETMSRELYRDPINGKLSGVCAGLANYFGLEVWLVRILVISAALLGGSFLVLLAYLALTFMLEKQPPQYVDQM
KAKQEHTLKQKPWEKGQTAESLLGTLEGDFQTLETSVRNMEAYVTSDTFKVDRAFKNM

Sequences:

>Translated_138_residues
MRSHLTGDETMSRELYRDPINGKLSGVCAGLANYFGLEVWLVRILVISAALLGGSFLVLLAYLALTFMLEKQPPQYVDQM
KAKQEHTLKQKPWEKGQTAESLLGTLEGDFQTLETSVRNMEAYVTSDTFKVDRAFKNM
>Mature_138_residues
MRSHLTGDETMSRELYRDPINGKLSGVCAGLANYFGLEVWLVRILVISAALLGGSFLVLLAYLALTFMLEKQPPQYVDQM
KAKQEHTLKQKPWEKGQTAESLLGTLEGDFQTLETSVRNMEAYVTSDTFKVDRAFKNM

Specific function: The phage shock protein (psp) operon (pspABCDE) may play a significant role in the competition for survival under nutrient- or energy-limited conditions. PspC is involved in transcription regulation [H]

COG id: COG1983

COG function: function code KT; Putative stress-responsive transcriptional regulator

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PspC family [H]

Homologues:

Organism=Escherichia coli, GI1787564, Length=129, Percent_Identity=35.6589147286822, Blast_Score=81, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007168
- InterPro:   IPR014320 [H]

Pfam domain/function: PF04024 PspC [H]

EC number: NA

Molecular weight: Translated: 15552; Mature: 15552

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSHLTGDETMSRELYRDPINGKLSGVCAGLANYFGLEVWLVRILVISAALLGGSFLVLL
CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYLALTFMLEKQPPQYVDQMKAKQEHTLKQKPWEKGQTAESLLGTLEGDFQTLETSVRNM
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHH
EAYVTSDTFKVDRAFKNM
HHHHCCCHHHHHHHHHCC
>Mature Secondary Structure
MRSHLTGDETMSRELYRDPINGKLSGVCAGLANYFGLEVWLVRILVISAALLGGSFLVLL
CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYLALTFMLEKQPPQYVDQMKAKQEHTLKQKPWEKGQTAESLLGTLEGDFQTLETSVRNM
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHH
EAYVTSDTFKVDRAFKNM
HHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]