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The map label for this gene is ccmF [H]

Identifier: 218709915

GI number: 218709915

Start: 2071164

End: 2073086

Strand: Reverse

Name: ccmF [H]

Synonym: VS_1928

Alternate gene names: 218709915

Gene position: 2073086-2071164 (Counterclockwise)

Preceding gene: 218709916

Following gene: 218709914

Centisome position: 62.83

GC content: 45.29

Gene sequence:

>1923_bases
ATGGTCGGTTCTTTGGGGCTGTTTAGTTTAGTGTTGGTTGCTGCACTCAGTAGCATTATTGGTGTGCATTCGTTTTATCA
AATGCTAAACAAACGGACGCAAAATATAAGTTTAATCCGCAGTTTCTCTCTTTCAAGTGCATTGTTTTCTCTCACTTCTG
TCGCATTGCTTGGCTATGCTTTTGTCAGTGATGACTTCTCTATTCTCTATGTCGCTGAACATTCAAACACTCAATTACCC
TCATTTTTTAAGCTAGCAGCCGTATGGGCGGGCCATGAAGGTTCTTTGTTATTTTGGGTACTGACGATCAGCGTCTGGTC
TGGCGTGATTGCCTTACAAAAACACTATTCGAATGAATACCAAAGCCGTGTGTTGTGGGTAATGAATCTACTGCTCGCGA
TATTTACTTGGTTCACCTTATTTTCATCAAACCCATTTGAAATGAACTCGATCTTGCCGCTAGAAGGGCGTGACCTTAAC
CCAATGTTACAAGATGTCGGCCTGATCTTTCACCCTCCATTGCTTTACCTTGGCTATGTAGGCTTTTCTGTGGTGCTGGC
ATTTGCCGTTGCCGCTTTGCTGGTTGACCCTATTGAGTTTGATTGGGTTGCCCATTGTCGCAGTTGGTGTCTAGTCGCTT
GGATCTTTTTAACCGCAGGGATCATTCTTGGCTCTTGGTGGGCGTATTACGAATTAGGCTGGGGCGGCTGGTGGTTCTGG
GATCCTGTTGAAAATGCCAGTTTGTTGCCATGGCTCACTTCGACAGCCTTGTTGCATTGTTTAGGTGTTGCCAAGGGCAA
ACAACAGCTTCTGAAGTGGTCTCTAAGCCTTGCTTTTATTACATTTTGTTTGAGTATCTTAGGCACCTTTATTGTTCGTT
CTGGCGTACTCACATCGGTACATGCTTTTGCTGTAGACCCGGCTAAAGGTATCGCATTACTACTCATATTGATGTTGGTG
CTAGTGAGCTCTTTCTCTCTTCTTATCATCAGAGGGGAGTCTTTTGGATCTAACCCGATTACTAGCTTCGCCAGTAAGAG
CTTTTTAAGCCTAGTTGCGGTGCTCATTTTTGTACTGGCGACCGCTGTTGTGGTGTTTGGTACATTTTATCCAATGGTCT
TTGAACTGCTTGGCCTGGGGAACATATCGGTCGGTGCGCCATACTTTAACCTACTGATTGCACCTTTGGCGTTACTCGCA
CTTGGCGTGGTTGGCTTAGCTCCATTGCTTAGCATTAAACCCCAAGCAACCAAAGACGTTATTGCCTCGTTAGCTGTGGT
GTCATTTGTGCTTGGGTACATTTGTTATTCATGGCAAGTGGAACAAGTCCAACGACAAGTGATGGTTCTGATGACATGGT
CACTCGCATTTTGGGTTTTACTCACTCATGTTTATGGCTTAGCGGTAACGCGCAGTTCCAAGTTCCAACGAAAAGTCTGG
GTGATGACATTTGCCCATGTTGGTGTCGCGATATTAGCGGTAGGTGCGGCAATGAATAGCTACCACTCGTTTGAACGCAG
CTATAAACTGAGCCCAGGAGCACAAGTAGAGTTCATGGATTGGACGCTTGCTCATGAAGATACAGAGCTTTATGTCGCCT
CAAACTTTACCGCAGAGAAGGCGATACTTAAGCTAGAAACTGGTGAGCAAAGTTTTTCCATTACACCTGAAAGAAGACAT
TATCAAGTTCGAGTGATGAACATGAGCGAGCCCGCAATGAAATGGTTCTGGCATGGCGATGTGTATATCACCATGGGTGA
GAAAGTTGACGCTACCGCTTACGCATTTCGAGTTCAGTACAAAGCGTATGCTCGTTGGATATGGCTTGGTGGGCTGTTCT
CAATTCTAGGTGCTGTGCTTTCACTGACCAATCGTAAAAAGAAAACCGTTAAGGCTGCACAGTATGCATACCAGCGTTCG
TAA

Upstream 100 bases:

>100_bases
GTCGGATACTAAACATCTGCTTATTAATGAACATGCTTTTAGTAAACATGAGATGCGTGTTCAGATCGGCTCTGCTCTAG
CGGAGTCTTATTGAGGTGAT

Downstream 100 bases:

>100_bases
TAAACTCATTGCTCTATTTTCAGTGGCTGTTGCTTTGGTCGTTGCATTTTCATATGCGCTCGACAATAAGCAACAAACGA
CCAGCGTTTCAGATCAAAAA

Product: cytochrome c biogenesis factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 640; Mature: 640

Protein sequence:

>640_residues
MVGSLGLFSLVLVAALSSIIGVHSFYQMLNKRTQNISLIRSFSLSSALFSLTSVALLGYAFVSDDFSILYVAEHSNTQLP
SFFKLAAVWAGHEGSLLFWVLTISVWSGVIALQKHYSNEYQSRVLWVMNLLLAIFTWFTLFSSNPFEMNSILPLEGRDLN
PMLQDVGLIFHPPLLYLGYVGFSVVLAFAVAALLVDPIEFDWVAHCRSWCLVAWIFLTAGIILGSWWAYYELGWGGWWFW
DPVENASLLPWLTSTALLHCLGVAKGKQQLLKWSLSLAFITFCLSILGTFIVRSGVLTSVHAFAVDPAKGIALLLILMLV
LVSSFSLLIIRGESFGSNPITSFASKSFLSLVAVLIFVLATAVVVFGTFYPMVFELLGLGNISVGAPYFNLLIAPLALLA
LGVVGLAPLLSIKPQATKDVIASLAVVSFVLGYICYSWQVEQVQRQVMVLMTWSLAFWVLLTHVYGLAVTRSSKFQRKVW
VMTFAHVGVAILAVGAAMNSYHSFERSYKLSPGAQVEFMDWTLAHEDTELYVASNFTAEKAILKLETGEQSFSITPERRH
YQVRVMNMSEPAMKWFWHGDVYITMGEKVDATAYAFRVQYKAYARWIWLGGLFSILGAVLSLTNRKKKTVKAAQYAYQRS

Sequences:

>Translated_640_residues
MVGSLGLFSLVLVAALSSIIGVHSFYQMLNKRTQNISLIRSFSLSSALFSLTSVALLGYAFVSDDFSILYVAEHSNTQLP
SFFKLAAVWAGHEGSLLFWVLTISVWSGVIALQKHYSNEYQSRVLWVMNLLLAIFTWFTLFSSNPFEMNSILPLEGRDLN
PMLQDVGLIFHPPLLYLGYVGFSVVLAFAVAALLVDPIEFDWVAHCRSWCLVAWIFLTAGIILGSWWAYYELGWGGWWFW
DPVENASLLPWLTSTALLHCLGVAKGKQQLLKWSLSLAFITFCLSILGTFIVRSGVLTSVHAFAVDPAKGIALLLILMLV
LVSSFSLLIIRGESFGSNPITSFASKSFLSLVAVLIFVLATAVVVFGTFYPMVFELLGLGNISVGAPYFNLLIAPLALLA
LGVVGLAPLLSIKPQATKDVIASLAVVSFVLGYICYSWQVEQVQRQVMVLMTWSLAFWVLLTHVYGLAVTRSSKFQRKVW
VMTFAHVGVAILAVGAAMNSYHSFERSYKLSPGAQVEFMDWTLAHEDTELYVASNFTAEKAILKLETGEQSFSITPERRH
YQVRVMNMSEPAMKWFWHGDVYITMGEKVDATAYAFRVQYKAYARWIWLGGLFSILGAVLSLTNRKKKTVKAAQYAYQRS
>Mature_640_residues
MVGSLGLFSLVLVAALSSIIGVHSFYQMLNKRTQNISLIRSFSLSSALFSLTSVALLGYAFVSDDFSILYVAEHSNTQLP
SFFKLAAVWAGHEGSLLFWVLTISVWSGVIALQKHYSNEYQSRVLWVMNLLLAIFTWFTLFSSNPFEMNSILPLEGRDLN
PMLQDVGLIFHPPLLYLGYVGFSVVLAFAVAALLVDPIEFDWVAHCRSWCLVAWIFLTAGIILGSWWAYYELGWGGWWFW
DPVENASLLPWLTSTALLHCLGVAKGKQQLLKWSLSLAFITFCLSILGTFIVRSGVLTSVHAFAVDPAKGIALLLILMLV
LVSSFSLLIIRGESFGSNPITSFASKSFLSLVAVLIFVLATAVVVFGTFYPMVFELLGLGNISVGAPYFNLLIAPLALLA
LGVVGLAPLLSIKPQATKDVIASLAVVSFVLGYICYSWQVEQVQRQVMVLMTWSLAFWVLLTHVYGLAVTRSSKFQRKVW
VMTFAHVGVAILAVGAAMNSYHSFERSYKLSPGAQVEFMDWTLAHEDTELYVASNFTAEKAILKLETGEQSFSITPERRH
YQVRVMNMSEPAMKWFWHGDVYITMGEKVDATAYAFRVQYKAYARWIWLGGLFSILGAVLSLTNRKKKTVKAAQYAYQRS

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=591, Percent_Identity=40.9475465313029, Blast_Score=418, Evalue=1e-118,
Organism=Escherichia coli, GI1790511, Length=401, Percent_Identity=46.6334164588529, Blast_Score=296, Evalue=3e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 71304; Mature: 71304

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGSLGLFSLVLVAALSSIIGVHSFYQMLNKRTQNISLIRSFSLSSALFSLTSVALLGYA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FVSDDFSILYVAEHSNTQLPSFFKLAAVWAGHEGSLLFWVLTISVWSGVIALQKHYSNEY
HCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
QSRVLWVMNLLLAIFTWFTLFSSNPFEMNSILPLEGRDLNPMLQDVGLIFHPPLLYLGYV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCHHHHHHHH
GFSVVLAFAVAALLVDPIEFDWVAHCRSWCLVAWIFLTAGIILGSWWAYYELGWGGWWFW
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEECCCCEEEE
DPVENASLLPWLTSTALLHCLGVAKGKQQLLKWSLSLAFITFCLSILGTFIVRSGVLTSV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
HAFAVDPAKGIALLLILMLVLVSSFSLLIIRGESFGSNPITSFASKSFLSLVAVLIFVLA
HHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TAVVVFGTFYPMVFELLGLGNISVGAPYFNLLIAPLALLALGVVGLAPLLSIKPQATKDV
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IASLAVVSFVLGYICYSWQVEQVQRQVMVLMTWSLAFWVLLTHVYGLAVTRSSKFQRKVW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VMTFAHVGVAILAVGAAMNSYHSFERSYKLSPGAQVEFMDWTLAHEDTELYVASNFTAEK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEECCCHHH
AILKLETGEQSFSITPERRHYQVRVMNMSEPAMKWFWHGDVYITMGEKVDATAYAFRVQY
HEEEEECCCCCCCCCCCCCEEEEEEEECCCHHHHHEEECEEEEEECCCCCCHHHHHEEHH
KAYARWIWLGGLFSILGAVLSLTNRKKKTVKAAQYAYQRS
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVGSLGLFSLVLVAALSSIIGVHSFYQMLNKRTQNISLIRSFSLSSALFSLTSVALLGYA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FVSDDFSILYVAEHSNTQLPSFFKLAAVWAGHEGSLLFWVLTISVWSGVIALQKHYSNEY
HCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
QSRVLWVMNLLLAIFTWFTLFSSNPFEMNSILPLEGRDLNPMLQDVGLIFHPPLLYLGYV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCHHHHHHHH
GFSVVLAFAVAALLVDPIEFDWVAHCRSWCLVAWIFLTAGIILGSWWAYYELGWGGWWFW
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEECCCCEEEE
DPVENASLLPWLTSTALLHCLGVAKGKQQLLKWSLSLAFITFCLSILGTFIVRSGVLTSV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
HAFAVDPAKGIALLLILMLVLVSSFSLLIIRGESFGSNPITSFASKSFLSLVAVLIFVLA
HHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TAVVVFGTFYPMVFELLGLGNISVGAPYFNLLIAPLALLALGVVGLAPLLSIKPQATKDV
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IASLAVVSFVLGYICYSWQVEQVQRQVMVLMTWSLAFWVLLTHVYGLAVTRSSKFQRKVW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VMTFAHVGVAILAVGAAMNSYHSFERSYKLSPGAQVEFMDWTLAHEDTELYVASNFTAEK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEECCCHHH
AILKLETGEQSFSITPERRHYQVRVMNMSEPAMKWFWHGDVYITMGEKVDATAYAFRVQY
HEEEEECCCCCCCCCCCCCEEEEEEEECCCHHHHHEEECEEEEEECCCCCCHHHHHEEHH
KAYARWIWLGGLFSILGAVLSLTNRKKKTVKAAQYAYQRS
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]