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The map label for this gene is nrfF [H]

Identifier: 218709913

GI number: 218709913

Start: 2070165

End: 2070605

Strand: Reverse

Name: nrfF [H]

Synonym: VS_1926

Alternate gene names: 218709913

Gene position: 2070605-2070165 (Counterclockwise)

Preceding gene: 218709914

Following gene: 218709912

Centisome position: 62.76

GC content: 39.46

Gene sequence:

>441_bases
ATGATGAAGTTCCTGCTCAACATAGTGCTCATACTTAGCTCCGCTATTGTCGTCAACTTCCCTGTAATAGCCGAGGACTT
GTTTACGGCGAGTGATAAAGATACAAGCATTCAGGTAGAGTTATTTGAGTTTGAAAGCCCTAATCAACAACAGCGTGCTA
TTAGTTTGGCAAAATCGCTGCGCTGCCCACAATGTCAGAATCAAAATCTGATTGAGTCGAACTCTCCCATAGCAAAAGAT
TTACGCCTTGTTGTATTCAATATGGTGAAAGCAGGGAAGAGTAACAATGAAATCACTCAGTACATGACAGAAAGGTTTGG
TGAATTTGTGCTTTATAAGCCAGCAATGAGTGTTTCAAACATATTACTTTGGTTGTTACCGAGCCTATTATTTCTTTTGT
TTGTATATTTGTCAGTAGCGAGTGTTAGGAAGGACTCATAA

Upstream 100 bases:

>100_bases
TAGTTGATGCTGAAGGCCAAATAGTTAAGAAGTTGCTAGGTGTGATTAATGAATCGGTTTGGCGCAAAGAACTCGCTCAC
TATTTTAAAGGTAAAAATGG

Downstream 100 bases:

>100_bases
AAATTGTGTATTACTGTTTACCAATTGAGCTGTATTTTGTAATATTAACGGATTATAAAGGCTAAGCACTGTTATATAAG
GATGTGTTTGTGGATAACGT

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MMKFLLNIVLILSSAIVVNFPVIAEDLFTASDKDTSIQVELFEFESPNQQQRAISLAKSLRCPQCQNQNLIESNSPIAKD
LRLVVFNMVKAGKSNNEITQYMTERFGEFVLYKPAMSVSNILLWLLPSLLFLLFVYLSVASVRKDS

Sequences:

>Translated_146_residues
MMKFLLNIVLILSSAIVVNFPVIAEDLFTASDKDTSIQVELFEFESPNQQQRAISLAKSLRCPQCQNQNLIESNSPIAKD
LRLVVFNMVKAGKSNNEITQYMTERFGEFVLYKPAMSVSNILLWLLPSLLFLLFVYLSVASVRKDS
>Mature_146_residues
MMKFLLNIVLILSSAIVVNFPVIAEDLFTASDKDTSIQVELFEFESPNQQQRAISLAKSLRCPQCQNQNLIESNSPIAKD
LRLVVFNMVKAGKSNNEITQYMTERFGEFVLYKPAMSVSNILLWLLPSLLFLLFVYLSVASVRKDS

Specific function: Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=126, Percent_Identity=34.1269841269841, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1790512, Length=79, Percent_Identity=51.8987341772152, Blast_Score=90, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR017565
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16540; Mature: 16540

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKFLLNIVLILSSAIVVNFPVIAEDLFTASDKDTSIQVELFEFESPNQQQRAISLAKSL
CHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHC
RCPQCQNQNLIESNSPIAKDLRLVVFNMVKAGKSNNEITQYMTERFGEFVLYKPAMSVSN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEECCHHHHHH
ILLWLLPSLLFLLFVYLSVASVRKDS
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMKFLLNIVLILSSAIVVNFPVIAEDLFTASDKDTSIQVELFEFESPNQQQRAISLAKSL
CHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHC
RCPQCQNQNLIESNSPIAKDLRLVVFNMVKAGKSNNEITQYMTERFGEFVLYKPAMSVSN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEECCHHHHHH
ILLWLLPSLLFLLFVYLSVASVRKDS
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]