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The map label for this gene is bepC [H]

Identifier: 218709830

GI number: 218709830

Start: 1989456

End: 1990763

Strand: Direct

Name: bepC [H]

Synonym: VS_1843

Alternate gene names: 218709830

Gene position: 1989456-1990763 (Clockwise)

Preceding gene: 218709825

Following gene: 218709831

Centisome position: 60.3

GC content: 44.65

Gene sequence:

>1308_bases
TTGAAATTGTTTAAATTATCCATAATGTGTTGCTTAGTTGCTGCAGCACCACTCGCCGCTCAAACTCTGGAACAGTCTGT
GGCTATTACCCTGGCAACCAATCCAGAGATAAAAAGCATCTTTAACGAATATGTGAGCGTGAAAAAGCGTAATGACGCCT
CTGGTGGGGCATACAGGCCGAGTATCGACCTTGATGCCGGTATTGGTTATGAAGGTATAAACCCTGCACCAAATAACGGT
CCAGATACGGATCTAACAAGAAAGGAAGCAACGATTTCCCTCACTCAATTGCTGTGGGATGGTTCTTCGACTCTGAACGA
TATTGACCGTACCGCTGCAGAAGCCGAATCAGTTCGTTTGCAATTGATAGCAGATGCCGAAGACAAAGCACTGGAGGTAA
CACAAATATATCTCGACGCAGTAAAAGCGACTGAGGTACTGGCGCTGTCAGAAAGTAACCTTGCGATACACAAGAAAATC
TATAAAGACATAAAAAAACGAGCGAGTTCAGGCATAGGTTCTACCGCAGACGTTTCGCAAGTAGAAGCTAGGATTGCAAA
AGCTCATGGTAACTTATTAGCCGCCCAGAATAATTTGATCGACACACATACCCAATTTAGAAGAGTTGTAGGACAAGAAC
CGCTAGGTCTGATTTACCCAAGGGCCGACATATCTTGGATTCCACTGTCATTGTCAGATGCCCTAGTTGACGCTTTAGAT
AAACACCCTGTAATTAAAATAGCGGCGGCAGATGTCGACGCAGCACATTTTCAATATAAACAGTCCAAAGGCGTAAACTA
TCCTACATTCTCTATCGAAGCGTCTCAGTCATGGCGTGATGATGCAGGAGGCGATGAAGGTTCAAGTCAAGAGACGCTCG
CAATGTTGAGAATGCGGTATAACTTATATAACGGTGGTGCAGACAGCGCCAATTCAGAAGCTTCTGCTTACCAACTCAAT
AAGGCGAAAGATCTTAGAGATCGTGCTTATCGCCAAGTCGAAGAAGGACTTCGCCTCTCATGGAGCGCCTTAGATCTCAC
ACTGCAACAGAAAAACTTTTTGTCCGACCATGTTGATTCAGCTTCAGAAACCGTTATCGCCTATGAAAAACAATACCGAA
TAGGTAAACGTACTCTGCTTGACCTGCTCAATACTGAGAACGAACTGTTTGAAGCCCGCAAAGATTATCTGGATGCCCAT
TATTCGGAGCAGTACGCTAAATACCGAGTGATGAACGCTACAGGTTCTTTATTGAATGCTCTGCTGGTTGATATACCGGA
AGAGTGGACAACGGCCGTGGAGTATTAA

Upstream 100 bases:

>100_bases
TTGCAAATGTCCTAAGCTTCGTTTAATACCATTCACTCAATTCAACGGTAAACGTAGGTTGGGAAACGGATGAGGCATTG
AAAGTAGAAGGAGAGCTACT

Downstream 100 bases:

>100_bases
TGATGAAAATAACTTACTTATTACTTCCCGTATTAACGATGACTTTATTTGCCTGCTCCAATCAGCAGCGAGAAGCCTAC
ATCGAAACGCCCGAAGCTGA

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MKLFKLSIMCCLVAAAPLAAQTLEQSVAITLATNPEIKSIFNEYVSVKKRNDASGGAYRPSIDLDAGIGYEGINPAPNNG
PDTDLTRKEATISLTQLLWDGSSTLNDIDRTAAEAESVRLQLIADAEDKALEVTQIYLDAVKATEVLALSESNLAIHKKI
YKDIKKRASSGIGSTADVSQVEARIAKAHGNLLAAQNNLIDTHTQFRRVVGQEPLGLIYPRADISWIPLSLSDALVDALD
KHPVIKIAAADVDAAHFQYKQSKGVNYPTFSIEASQSWRDDAGGDEGSSQETLAMLRMRYNLYNGGADSANSEASAYQLN
KAKDLRDRAYRQVEEGLRLSWSALDLTLQQKNFLSDHVDSASETVIAYEKQYRIGKRTLLDLLNTENELFEARKDYLDAH
YSEQYAKYRVMNATGSLLNALLVDIPEEWTTAVEY

Sequences:

>Translated_435_residues
MKLFKLSIMCCLVAAAPLAAQTLEQSVAITLATNPEIKSIFNEYVSVKKRNDASGGAYRPSIDLDAGIGYEGINPAPNNG
PDTDLTRKEATISLTQLLWDGSSTLNDIDRTAAEAESVRLQLIADAEDKALEVTQIYLDAVKATEVLALSESNLAIHKKI
YKDIKKRASSGIGSTADVSQVEARIAKAHGNLLAAQNNLIDTHTQFRRVVGQEPLGLIYPRADISWIPLSLSDALVDALD
KHPVIKIAAADVDAAHFQYKQSKGVNYPTFSIEASQSWRDDAGGDEGSSQETLAMLRMRYNLYNGGADSANSEASAYQLN
KAKDLRDRAYRQVEEGLRLSWSALDLTLQQKNFLSDHVDSASETVIAYEKQYRIGKRTLLDLLNTENELFEARKDYLDAH
YSEQYAKYRVMNATGSLLNALLVDIPEEWTTAVEY
>Mature_435_residues
MKLFKLSIMCCLVAAAPLAAQTLEQSVAITLATNPEIKSIFNEYVSVKKRNDASGGAYRPSIDLDAGIGYEGINPAPNNG
PDTDLTRKEATISLTQLLWDGSSTLNDIDRTAAEAESVRLQLIADAEDKALEVTQIYLDAVKATEVLALSESNLAIHKKI
YKDIKKRASSGIGSTADVSQVEARIAKAHGNLLAAQNNLIDTHTQFRRVVGQEPLGLIYPRADISWIPLSLSDALVDALD
KHPVIKIAAADVDAAHFQYKQSKGVNYPTFSIEASQSWRDDAGGDEGSSQETLAMLRMRYNLYNGGADSANSEASAYQLN
KAKDLRDRAYRQVEEGLRLSWSALDLTLQQKNFLSDHVDSASETVIAYEKQYRIGKRTLLDLLNTENELFEARKDYLDAH
YSEQYAKYRVMNATGSLLNALLVDIPEEWTTAVEY

Specific function: Involved in the efflux of toxic and relatively hydrophobic compounds. Influences survival inside the host [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI87082199, Length=413, Percent_Identity=23.9709443099274, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 47944; Mature: 47944

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFKLSIMCCLVAAAPLAAQTLEQSVAITLATNPEIKSIFNEYVSVKKRNDASGGAYRP
CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCC
SIDLDAGIGYEGINPAPNNGPDTDLTRKEATISLTQLLWDGSSTLNDIDRTAAEAESVRL
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEE
QLIADAEDKALEVTQIYLDAVKATEVLALSESNLAIHKKIYKDIKKRASSGIGSTADVSQ
EEEECCCCHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
VEARIAKAHGNLLAAQNNLIDTHTQFRRVVGQEPLGLIYPRADISWIPLSLSDALVDALD
HHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCEEECCHHHHHHHHHC
KHPVIKIAAADVDAAHFQYKQSKGVNYPTFSIEASQSWRDDAGGDEGSSQETLAMLRMRY
CCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
NLYNGGADSANSEASAYQLNKAKDLRDRAYRQVEEGLRLSWSALDLTLQQKNFLSDHVDS
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHEEEEHHHHHHHHHHCC
ASETVIAYEKQYRIGKRTLLDLLNTENELFEARKDYLDAHYSEQYAKYRVMNATGSLLNA
CCCEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHH
LLVDIPEEWTTAVEY
HHHHCCHHHHHHCCC
>Mature Secondary Structure
MKLFKLSIMCCLVAAAPLAAQTLEQSVAITLATNPEIKSIFNEYVSVKKRNDASGGAYRP
CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCC
SIDLDAGIGYEGINPAPNNGPDTDLTRKEATISLTQLLWDGSSTLNDIDRTAAEAESVRL
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEE
QLIADAEDKALEVTQIYLDAVKATEVLALSESNLAIHKKIYKDIKKRASSGIGSTADVSQ
EEEECCCCHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
VEARIAKAHGNLLAAQNNLIDTHTQFRRVVGQEPLGLIYPRADISWIPLSLSDALVDALD
HHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCEEECCHHHHHHHHHC
KHPVIKIAAADVDAAHFQYKQSKGVNYPTFSIEASQSWRDDAGGDEGSSQETLAMLRMRY
CCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
NLYNGGADSANSEASAYQLNKAKDLRDRAYRQVEEGLRLSWSALDLTLQQKNFLSDHVDS
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHEEEEHHHHHHHHHHCC
ASETVIAYEKQYRIGKRTLLDLLNTENELFEARKDYLDAHYSEQYAKYRVMNATGSLLNA
CCCEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHH
LLVDIPEEWTTAVEY
HHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]