| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is 218709748
Identifier: 218709748
GI number: 218709748
Start: 1879946
End: 1880911
Strand: Reverse
Name: 218709748
Synonym: VS_1760
Alternate gene names: NA
Gene position: 1880911-1879946 (Counterclockwise)
Preceding gene: 218709749
Following gene: 218709742
Centisome position: 57.01
GC content: 41.1
Gene sequence:
>966_bases ATGATAATAATTTTAACTATGTGTTTAGGACGTCCTGCTATGGCTAAGAAAATAATATTCATTCATGGTCGCGCTCAAAA GCCCGATAAAGCTAACCTTCAAGCACTCTGGTACGAGGCTATAGAGCATGGCTTGCAGCGAGATTGTATCGGCTCAAGTT CATTACAAGCTTTTAAAGATGTCGATAAACGCTTTGTCTATTACGGTGAACTATCAAACACATTGTTAGACAAACCAACG GAAGACCCTGCAAGTCGTCAGCAGGCGCTGTCTGAACTCAAAAAGTACAAGACAAGCCAGTTCAATAAAACAACGTATAA CAAGGTATCTAAAATTGGTTTTCTAAAAGAGGCGTTAGCAGATACTTTTTCATCGCTGTTTGGAAAGCTAGGTGTGGCTG AGACACTCATAACGAAGGTCGCACCGGACATGGCGCATTATTGGTATGAAGATACCTATTTTGGTAGCGATGTCAGGTAT AGGCTAATGGTCGAACTGAAGGAAGCTTTTGATAATAAGGATGATGTGATGATTGTATCGCATAGCCTTGGTTCGATGAT CAGTTATGACGTGTTGTGGAAGCTGTCTCATTACGGAGAGTATAGACACGACTATGGTGCGGATAAGAAGGTCAACTTAT TGCTTACGCTCGGGTCACCGTTAGGCGATGAAAACGTAAAAGATAGGCTAAAAGGGAGCCGCTTGAAAGGTGAGAAGAAG TACCCTTTAAACATTCAGCAATGGATAAACATGTCGGCAGAAGATGATTTTATCTCTCATGACAGCAAAATTAGAAATGA CTTTAAAGATATGCTCAAACTGGATCTGATACCCGGTGGAATGAAAGATATCCACCCAATCTATAACCTCAATATTCGCA ACGGAAAAAGCAATCCACATGCCTCTATCGGTTATCTCGTTAACCCTAAATTCATCACAGTGCTGGATGAATGGCTCTCT AGTTAA
Upstream 100 bases:
>100_bases CGGCCTCATAGTTATATAAATGCTCTATCAACCACCTCTAGATACGTAATTAGTACCACTGTTATTAGTAAGGGCTGACC GAATCTAGTGGTGCTTTCTA
Downstream 100 bases:
>100_bases TTTGGTTTTACCATTGCCAATTGCTCGCTTCTCGTTCGTTGAAACTTAGATAAAACAAGGCCTCGCAAGTGCGAGGCCTT GTTAGACTCGTTCAACACAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MIIILTMCLGRPAMAKKIIFIHGRAQKPDKANLQALWYEAIEHGLQRDCIGSSSLQAFKDVDKRFVYYGELSNTLLDKPT EDPASRQQALSELKKYKTSQFNKTTYNKVSKIGFLKEALADTFSSLFGKLGVAETLITKVAPDMAHYWYEDTYFGSDVRY RLMVELKEAFDNKDDVMIVSHSLGSMISYDVLWKLSHYGEYRHDYGADKKVNLLLTLGSPLGDENVKDRLKGSRLKGEKK YPLNIQQWINMSAEDDFISHDSKIRNDFKDMLKLDLIPGGMKDIHPIYNLNIRNGKSNPHASIGYLVNPKFITVLDEWLS S
Sequences:
>Translated_321_residues MIIILTMCLGRPAMAKKIIFIHGRAQKPDKANLQALWYEAIEHGLQRDCIGSSSLQAFKDVDKRFVYYGELSNTLLDKPT EDPASRQQALSELKKYKTSQFNKTTYNKVSKIGFLKEALADTFSSLFGKLGVAETLITKVAPDMAHYWYEDTYFGSDVRY RLMVELKEAFDNKDDVMIVSHSLGSMISYDVLWKLSHYGEYRHDYGADKKVNLLLTLGSPLGDENVKDRLKGSRLKGEKK YPLNIQQWINMSAEDDFISHDSKIRNDFKDMLKLDLIPGGMKDIHPIYNLNIRNGKSNPHASIGYLVNPKFITVLDEWLS S >Mature_321_residues MIIILTMCLGRPAMAKKIIFIHGRAQKPDKANLQALWYEAIEHGLQRDCIGSSSLQAFKDVDKRFVYYGELSNTLLDKPT EDPASRQQALSELKKYKTSQFNKTTYNKVSKIGFLKEALADTFSSLFGKLGVAETLITKVAPDMAHYWYEDTYFGSDVRY RLMVELKEAFDNKDDVMIVSHSLGSMISYDVLWKLSHYGEYRHDYGADKKVNLLLTLGSPLGDENVKDRLKGSRLKGEKK YPLNIQQWINMSAEDDFISHDSKIRNDFKDMLKLDLIPGGMKDIHPIYNLNIRNGKSNPHASIGYLVNPKFITVLDEWLS S
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36679; Mature: 36679
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIILTMCLGRPAMAKKIIFIHGRAQKPDKANLQALWYEAIEHGLQRDCIGSSSLQAFKD CEEEEEEHHCCHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VDKRFVYYGELSNTLLDKPTEDPASRQQALSELKKYKTSQFNKTTYNKVSKIGFLKEALA HHHHEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH DTFSSLFGKLGVAETLITKVAPDMAHYWYEDTYFGSDVRYRLMVELKEAFDNKDDVMIVS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCCCCCEEEEE HSLGSMISYDVLWKLSHYGEYRHDYGADKKVNLLLTLGSPLGDENVKDRLKGSRLKGEKK CHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCCCCCCHHHHHHCCCCCCCCCC YPLNIQQWINMSAEDDFISHDSKIRNDFKDMLKLDLIPGGMKDIHPIYNLNIRNGKSNPH CCCCHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEECCCCCCC ASIGYLVNPKFITVLDEWLSS CEEEEEECCHHHHHHHHHHCC >Mature Secondary Structure MIIILTMCLGRPAMAKKIIFIHGRAQKPDKANLQALWYEAIEHGLQRDCIGSSSLQAFKD CEEEEEEHHCCHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VDKRFVYYGELSNTLLDKPTEDPASRQQALSELKKYKTSQFNKTTYNKVSKIGFLKEALA HHHHEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH DTFSSLFGKLGVAETLITKVAPDMAHYWYEDTYFGSDVRYRLMVELKEAFDNKDDVMIVS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCCCCCEEEEE HSLGSMISYDVLWKLSHYGEYRHDYGADKKVNLLLTLGSPLGDENVKDRLKGSRLKGEKK CHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCCCCCCHHHHHHCCCCCCCCCC YPLNIQQWINMSAEDDFISHDSKIRNDFKDMLKLDLIPGGMKDIHPIYNLNIRNGKSNPH CCCCHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEECCCCCCC ASIGYLVNPKFITVLDEWLSS CEEEEEECCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA