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The map label for this gene is ynfM [H]

Identifier: 218709672

GI number: 218709672

Start: 1808799

End: 1809998

Strand: Direct

Name: ynfM [H]

Synonym: VS_1683

Alternate gene names: 218709672

Gene position: 1808799-1809998 (Clockwise)

Preceding gene: 218709670

Following gene: 218709673

Centisome position: 54.82

GC content: 45.75

Gene sequence:

>1200_bases
ATGTTTGATAAAGGTAGTCCTCAATACAAACGCATCACCCAATCATTGGCGATTGGTTCATTTATCATTTTCTGTAACCT
TTACCTCTTTCAGCCTATCTTGCCGCACATGGCGGAGCACTTCCAAGTATCTGAAACTCAGATCAACTGGCTGTTTGCCG
CGACAACACTTGGGCTTTCCATCAGCTTGGTGCCTTGGGCAATCGCTTCTGAAACCTTTGGTCGAAAACCTATTATCCTA
TTCAGTCTGTTCGCTATTCCTTTGATTGGATTGAGCATGGTGTTCACAACCACTCTACTGCAACTTGTTATTGCCAGAGC
ATTCATGGGAATCGCAGTCGCTGCTTTTGCAGGCGTGGCGGTTGCCTATATGGTCGAAGAGTTATCACCCAAAGCATTTG
CAGTCGCGATCGGTGGTTATATTGCAGCCAACTCATTGGGTGGAATTTTCGGACGTGTATTGGGTGGCTTGATTACGGAT
TATTTTGACTGGCACGCAACGGTTTTGTTTTTCGTGGTCGGCTCCTTAATCGGCGCTCTCTATATTGCGTATAGTCTGCC
TGACCAACAAAACTTCAAACCTCAGAAAGGGTTGTTCTTTCATCATAACCGCTCGGTTGTGATGCACTTAAGAAACCGTA
CCTTGTGGCTCGCGATGTTGATTGGTGGCGCTAACTTCGCGCTATTCGTTAACCTGTATTCAGTAATGGGCTTTAGGTTG
GTATCCGAACCTCACTCAGTGCCTGTGGGCTTAGCTTCACTGATATTCCTATGTTACTTGGCCGGTACGGTAAGCTCTAA
ACTTTCCAATAAATGGACACTTCGTTTTGACCCGTTAAACGGTATATTGATCGGCGTGTGTATCAGCTTAATTGGTATGT
TGGTTTCTGCCGTCGACAAAGTCCCATTCATGTTAGCTGGGTTGTTATTGATCAGTGGCGGAGCTTTTTTCGCCCATACC
CTAGCCTATTCTTGGGTAAGTCAAAAAGCATCGAGCGCGAAAGCGACAGCAACCGCACTTTACTTGGTTCACTATTACAT
AGGCGGGAGCTTAGGTGGTTTCTTACTCTTATATTGCTGGCAGTTGTTCGGTTGGAATGGTGTTATCGCCGGTGGGTCTA
TCTTTTATGTCGCGATATTTGCATGGGTCTACCAGTTAAAACAACTTCAAGCGTCAGCCTCTAAACTCGCACAAGCATAA

Upstream 100 bases:

>100_bases
TAAATATATAGAGGTGATATTTTTAATATATTTCTTTAATTACACTTGTACTGATAACTTGTTCACAAATAGCTTACTAA
CTCGTGCAGGCACAACGTAA

Downstream 100 bases:

>100_bases
GTACGACCGAGGTTGTAACTCAATTATTGCTTTTGATTAACGTCCGTTCTGATATCCTACGCAAAATTTCATTTCGGAAC
CTGTTATGTCGAACACTCAA

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MFDKGSPQYKRITQSLAIGSFIIFCNLYLFQPILPHMAEHFQVSETQINWLFAATTLGLSISLVPWAIASETFGRKPIIL
FSLFAIPLIGLSMVFTTTLLQLVIARAFMGIAVAAFAGVAVAYMVEELSPKAFAVAIGGYIAANSLGGIFGRVLGGLITD
YFDWHATVLFFVVGSLIGALYIAYSLPDQQNFKPQKGLFFHHNRSVVMHLRNRTLWLAMLIGGANFALFVNLYSVMGFRL
VSEPHSVPVGLASLIFLCYLAGTVSSKLSNKWTLRFDPLNGILIGVCISLIGMLVSAVDKVPFMLAGLLLISGGAFFAHT
LAYSWVSQKASSAKATATALYLVHYYIGGSLGGFLLLYCWQLFGWNGVIAGGSIFYVAIFAWVYQLKQLQASASKLAQA

Sequences:

>Translated_399_residues
MFDKGSPQYKRITQSLAIGSFIIFCNLYLFQPILPHMAEHFQVSETQINWLFAATTLGLSISLVPWAIASETFGRKPIIL
FSLFAIPLIGLSMVFTTTLLQLVIARAFMGIAVAAFAGVAVAYMVEELSPKAFAVAIGGYIAANSLGGIFGRVLGGLITD
YFDWHATVLFFVVGSLIGALYIAYSLPDQQNFKPQKGLFFHHNRSVVMHLRNRTLWLAMLIGGANFALFVNLYSVMGFRL
VSEPHSVPVGLASLIFLCYLAGTVSSKLSNKWTLRFDPLNGILIGVCISLIGMLVSAVDKVPFMLAGLLLISGGAFFAHT
LAYSWVSQKASSAKATATALYLVHYYIGGSLGGFLLLYCWQLFGWNGVIAGGSIFYVAIFAWVYQLKQLQASASKLAQA
>Mature_399_residues
MFDKGSPQYKRITQSLAIGSFIIFCNLYLFQPILPHMAEHFQVSETQINWLFAATTLGLSISLVPWAIASETFGRKPIIL
FSLFAIPLIGLSMVFTTTLLQLVIARAFMGIAVAAFAGVAVAYMVEELSPKAFAVAIGGYIAANSLGGIFGRVLGGLITD
YFDWHATVLFFVVGSLIGALYIAYSLPDQQNFKPQKGLFFHHNRSVVMHLRNRTLWLAMLIGGANFALFVNLYSVMGFRL
VSEPHSVPVGLASLIFLCYLAGTVSSKLSNKWTLRFDPLNGILIGVCISLIGMLVSAVDKVPFMLAGLLLISGGAFFAHT
LAYSWVSQKASSAKATATALYLVHYYIGGSLGGFLLLYCWQLFGWNGVIAGGSIFYVAIFAWVYQLKQLQASASKLAQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=370, Percent_Identity=32.7027027027027, Blast_Score=192, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR005829 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43426; Mature: 43426

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDKGSPQYKRITQSLAIGSFIIFCNLYLFQPILPHMAEHFQVSETQINWLFAATTLGLS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEHHHHCCE
ISLVPWAIASETFGRKPIILFSLFAIPLIGLSMVFTTTLLQLVIARAFMGIAVAAFAGVA
EEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAYMVEELSPKAFAVAIGGYIAANSLGGIFGRVLGGLITDYFDWHATVLFFVVGSLIGAL
HHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIAYSLPDQQNFKPQKGLFFHHNRSVVMHLRNRTLWLAMLIGGANFALFVNLYSVMGFRL
HHHHCCCCCCCCCCCCCEEEECCCEEEEEECCCCEEEHHHHCCCCHHHHHHHHHHHHHHH
VSEPHSVPVGLASLIFLCYLAGTVSSKLSNKWTLRFDPLNGILIGVCISLIGMLVSAVDK
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
VPFMLAGLLLISGGAFFAHTLAYSWVSQKASSAKATATALYLVHYYIGGSLGGFLLLYCW
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
QLFGWNGVIAGGSIFYVAIFAWVYQLKQLQASASKLAQA
HHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFDKGSPQYKRITQSLAIGSFIIFCNLYLFQPILPHMAEHFQVSETQINWLFAATTLGLS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEHHHHCCE
ISLVPWAIASETFGRKPIILFSLFAIPLIGLSMVFTTTLLQLVIARAFMGIAVAAFAGVA
EEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAYMVEELSPKAFAVAIGGYIAANSLGGIFGRVLGGLITDYFDWHATVLFFVVGSLIGAL
HHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIAYSLPDQQNFKPQKGLFFHHNRSVVMHLRNRTLWLAMLIGGANFALFVNLYSVMGFRL
HHHHCCCCCCCCCCCCCEEEECCCEEEEEECCCCEEEHHHHCCCCHHHHHHHHHHHHHHH
VSEPHSVPVGLASLIFLCYLAGTVSSKLSNKWTLRFDPLNGILIGVCISLIGMLVSAVDK
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
VPFMLAGLLLISGGAFFAHTLAYSWVSQKASSAKATATALYLVHYYIGGSLGGFLLLYCW
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
QLFGWNGVIAGGSIFYVAIFAWVYQLKQLQASASKLAQA
HHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]