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The map label for this gene is 218709660

Identifier: 218709660

GI number: 218709660

Start: 1797546

End: 1798226

Strand: Reverse

Name: 218709660

Synonym: VS_1671

Alternate gene names: NA

Gene position: 1798226-1797546 (Counterclockwise)

Preceding gene: 218709662

Following gene: 218709659

Centisome position: 54.5

GC content: 39.94

Gene sequence:

>681_bases
TTGTGTTGGAAAATGACTAATATTTTTATCGTTGTAATTGTTCTGGTTGTGTTCTTTTACTTTATTCAAAACTATCTAGT
AAAAAATGATGACACCAAAGATCATGCTTATCAAAAGAAAGGTTCGTTAATGTCGGCGCAACAAGCGACCTTTTATAACG
CACTCAAATCTGCAGTGGGTAACCATGGGGAAGTATTTGCTAAAGTGAGCATGTCTAACATTGTTGTCCCCGCTAAGGCG
AACAATAAAAAGAACTGGTTTATTGCGAACAACAAAATCTCACGCAGTTATTTTGACTTTGTAGTGTGCGACCCGCGAAC
GTTAGAGCCACGTGTAATCATCGAATTGGATAATGGAAAAGAGCTGAATAAAGGAAAGGTTGATCGCGAGAAGCTATTGA
TGCACGTTTGTAAATCGGCTGGCCTTCCACTTATTGGCGCTTCAATAAAGCACAGTTATCAAGTGAGCCGTTTGAAGAGG
TTACTGGCAGCACACATCGATTTGATTGAGCCATCTAAAGAAGTTCGATTCTGTAAGAAATGTAGCAGCCCTATGATCAT
CAAACTCGCAAGCCATGGCGATTATAAAGGCCGACGTTTCTTTACTTGTAGTCGTCAACCTAACTGTACTTATACAGAGA
ACTACAACGTCGTGTTCGACATGGACGAAGATTCTAACTAA

Upstream 100 bases:

>100_bases
CAAAGGTCATGATTCCAATTCGCAGCTCTGCTTCTTTTGCTTGCCACGTGACGCTTTTCTACATACGCTAACCACTCTCT
TAATCCCTATACAAATGTGA

Downstream 100 bases:

>100_bases
TACATTGCGCCAAAGTGCTCAGTAAAGGGAGAAAAGACACCAAGCATGCTGATGTCTGTAATCATCGAAGTTGAACTTAA
ATGTGATCTACTTCAAGCCA

Product: Zn-finger domain associated with topoisomerase type I

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MCWKMTNIFIVVIVLVVFFYFIQNYLVKNDDTKDHAYQKKGSLMSAQQATFYNALKSAVGNHGEVFAKVSMSNIVVPAKA
NNKKNWFIANNKISRSYFDFVVCDPRTLEPRVIIELDNGKELNKGKVDREKLLMHVCKSAGLPLIGASIKHSYQVSRLKR
LLAAHIDLIEPSKEVRFCKKCSSPMIIKLASHGDYKGRRFFTCSRQPNCTYTENYNVVFDMDEDSN

Sequences:

>Translated_226_residues
MCWKMTNIFIVVIVLVVFFYFIQNYLVKNDDTKDHAYQKKGSLMSAQQATFYNALKSAVGNHGEVFAKVSMSNIVVPAKA
NNKKNWFIANNKISRSYFDFVVCDPRTLEPRVIIELDNGKELNKGKVDREKLLMHVCKSAGLPLIGASIKHSYQVSRLKR
LLAAHIDLIEPSKEVRFCKKCSSPMIIKLASHGDYKGRRFFTCSRQPNCTYTENYNVVFDMDEDSN
>Mature_226_residues
MCWKMTNIFIVVIVLVVFFYFIQNYLVKNDDTKDHAYQKKGSLMSAQQATFYNALKSAVGNHGEVFAKVSMSNIVVPAKA
NNKKNWFIANNKISRSYFDFVVCDPRTLEPRVIIELDNGKELNKGKVDREKLLMHVCKSAGLPLIGASIKHSYQVSRLKR
LLAAHIDLIEPSKEVRFCKKCSSPMIIKLASHGDYKGRRFFTCSRQPNCTYTENYNVVFDMDEDSN

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25864; Mature: 25864

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCWKMTNIFIVVIVLVVFFYFIQNYLVKNDDTKDHAYQKKGSLMSAQQATFYNALKSAVG
CCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHC
NHGEVFAKVSMSNIVVPAKANNKKNWFIANNKISRSYFDFVVCDPRTLEPRVIIELDNGK
CCCEEEEEEEECEEEEECCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCEEEEEECCCC
ELNKGKVDREKLLMHVCKSAGLPLIGASIKHSYQVSRLKRLLAAHIDLIEPSKEVRFCKK
CCCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
CSSPMIIKLASHGDYKGRRFFTCSRQPNCTYTENYNVVFDMDEDSN
CCCCEEEEEECCCCCCCCEEEEECCCCCCEEECCCCEEEECCCCCC
>Mature Secondary Structure
MCWKMTNIFIVVIVLVVFFYFIQNYLVKNDDTKDHAYQKKGSLMSAQQATFYNALKSAVG
CCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHC
NHGEVFAKVSMSNIVVPAKANNKKNWFIANNKISRSYFDFVVCDPRTLEPRVIIELDNGK
CCCEEEEEEEECEEEEECCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCEEEEEECCCC
ELNKGKVDREKLLMHVCKSAGLPLIGASIKHSYQVSRLKRLLAAHIDLIEPSKEVRFCKK
CCCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
CSSPMIIKLASHGDYKGRRFFTCSRQPNCTYTENYNVVFDMDEDSN
CCCCEEEEEECCCCCCCCEEEEECCCCCCEEECCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA