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The map label for this gene is rnhA [H]

Identifier: 218709643

GI number: 218709643

Start: 1787202

End: 1787642

Strand: Reverse

Name: rnhA [H]

Synonym: VS_1653

Alternate gene names: 218709643

Gene position: 1787642-1787202 (Counterclockwise)

Preceding gene: 218709644

Following gene: 218709642

Centisome position: 54.18

GC content: 43.54

Gene sequence:

>441_bases
ATGAATGAAGAAAACTGTGCAATCTATATCGGTATCGCAACATCAAAAGGAAACGCATCAAAGCTACAGGGTGGGATTGG
TATCAGTGTTTATAACTACGATGGGCAGTTAGTTGACAAAAATAATCTATTAGTCGGTGAGATTGCCGATAGTGCTGAGT
TAGAGCTTATCGCATTGATAGAAGCTATAGCTTATGCCAGAGATGGAGACTGCCTGTATTCGAGTAGTGAATATTGTGTG
AAAGGGTTCAATGAATGGTTAGATAACTGGAAAGCAAAGGGGTGGCGAAAATCTGATAAGAAGCCAGTATCTAACCGTCA
TTTATGGCAACAGGTCGATATGCATCGAGCGAGCAAGTTTGTGGAAGTAAGGCGAGCGCATAAGGTCGGGGATTATGAAC
AGATGGGGAGAGCGGGGGATATGGCTAGGGAGGTGCTTTGA

Upstream 100 bases:

>100_bases
TTGGCTGAAAGACCAAGCCATTAAGACTGAATTAACGCCACTGCACCAATTAAGGCATTACCAAAATGGTAGGCCAAAAC
TCGAACAAAGGAGCAAGACC

Downstream 100 bases:

>100_bases
ACTGGCTTTATTCTCCGAGATCTTAATCACAGTTATTAACACTTATCAAAGACTTAATCGTCATATTCAAACGACCTATA
TATTATCGAGTCAGATTGAT

Product: putative ribonuclease HI

Products: NA

Alternate protein names: RNase H [H]

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MNEENCAIYIGIATSKGNASKLQGGIGISVYNYDGQLVDKNNLLVGEIADSAELELIALIEAIAYARDGDCLYSSSEYCV
KGFNEWLDNWKAKGWRKSDKKPVSNRHLWQQVDMHRASKFVEVRRAHKVGDYEQMGRAGDMAREVL

Sequences:

>Translated_146_residues
MNEENCAIYIGIATSKGNASKLQGGIGISVYNYDGQLVDKNNLLVGEIADSAELELIALIEAIAYARDGDCLYSSSEYCV
KGFNEWLDNWKAKGWRKSDKKPVSNRHLWQQVDMHRASKFVEVRRAHKVGDYEQMGRAGDMAREVL
>Mature_146_residues
MNEENCAIYIGIATSKGNASKLQGGIGISVYNYDGQLVDKNNLLVGEIADSAELELIALIEAIAYARDGDCLYSSSEYCV
KGFNEWLDNWKAKGWRKSDKKPVSNRHLWQQVDMHRASKFVEVRRAHKVGDYEQMGRAGDMAREVL

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0328

COG function: function code L; Ribonuclease HI

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022892
- InterPro:   IPR012337
- InterPro:   IPR002156 [H]

Pfam domain/function: PF00075 RnaseH [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 16404; Mature: 16404

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEENCAIYIGIATSKGNASKLQGGIGISVYNYDGQLVDKNNLLVGEIADSAELELIALI
CCCCCEEEEEEEEECCCCHHHCCCCEEEEEECCCCEEECCCCEEEEECCCCCCHHHHHHH
EAIAYARDGDCLYSSSEYCVKGFNEWLDNWKAKGWRKSDKKPVSNRHLWQQVDMHRASKF
HHHHHCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VEVRRAHKVGDYEQMGRAGDMAREVL
HHHHHHHCCCCHHHHCCHHHHHHHCC
>Mature Secondary Structure
MNEENCAIYIGIATSKGNASKLQGGIGISVYNYDGQLVDKNNLLVGEIADSAELELIALI
CCCCCEEEEEEEEECCCCHHHCCCCEEEEEECCCCEEECCCCEEEEECCCCCCHHHHHHH
EAIAYARDGDCLYSSSEYCVKGFNEWLDNWKAKGWRKSDKKPVSNRHLWQQVDMHRASKF
HHHHHCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VEVRRAHKVGDYEQMGRAGDMAREVL
HHHHHHHCCCCHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA