Click here to switch to the map view.

The map label for this gene is 218709641

Identifier: 218709641

GI number: 218709641

Start: 1785343

End: 1786470

Strand: Reverse

Name: 218709641

Synonym: VS_1651

Alternate gene names: NA

Gene position: 1786470-1785343 (Counterclockwise)

Preceding gene: 218709642

Following gene: 218709640

Centisome position: 54.15

GC content: 40.6

Gene sequence:

>1128_bases
ATGGCATTAGAGTACTACTTAGATCGTTTTCAAAACCTGAAAATGAACAATGCTGGTGGCAAAAAAAGTCCTCATAAAGT
CTGTATGTTGCTGGCTGTTATGGATCTAATTCAAGCAGGGCATATTTTGACCAATAAGGTCTGCCTTAACCAAGCCCTTA
AAGAACGGTTTACTCATCACTTTGACAACTTGGCTCAAGGGGCTGATAAAAATACCCCGGAAAATCCTTTCTTCCATTTG
AGAAGTGAAGGCTTTTGGCTCCTTTGCTTCAATGACGGTTATGACAATACGTCAACCAGTCGTTATTCAGCAAAGGCGGT
CTCTCACGCATATATTGACGATGAGCTGTTTAGCTACATGAAAAGCTATATCGTTTCTAACGAACTAAAAGATGCTTTAG
TTTCTAATCTATCTGATCTAGCAACGTTATATCATCAGTGGTTGATTGATATTGGCAAATCTGAAAAAACCGCGAAGAAC
TACCTTGGAGCCATAAGAGGCTCGATATCTAATTGGTTGATGGATGTTGGCGAGCTAGAAGCCCCGCTTACTGATATCAA
TTCGTATCGTGAGTTTGTTGGATATGAAGAAAAAGCGAGAAAGTTGGAGCAGTTTCAAATTCGTGACTCTAGAGGAAACG
GGATGTACAGCGCCGCTTTGTCCCATTACCACCAGTTTTTAGCTGACCTATCTCAAGTCGATGTTAATGCAGACATCAAA
CAAGTGATGACTGACAAAACTTTGTCCGAAACTGAAAAGACGATTTTGGTTAATACAAGAGTAGGGCAGGGACACTTTAG
ATCAAAACTGATTCAGATGTGGGGTGGTTGCGCCATTACAGGGTATCGAAATACACAGCTGTTATTAGCTTCACACATTA
AACCCTGGCGAGATTCTAGTAATGAAGAGCGATTAGATAAATTTAATGGTTTGCTGCTTCTTGCCAACCTAGATAAAGCT
TTTGATCTCGGTTTTATCTCCTTTGATGATAACGGAAAGGTACTTATTTCAAGCTACTTGGAGTCTCCGGATGTGATCGG
TTTAAAGGAAGATATGGCATTTAGCATCATGCCGGATCACAGACCATACCTTCGTTATCATCGAGGCGAGTTATTTAAAG
GACGCTAA

Upstream 100 bases:

>100_bases
GTCACGTTGCTAAAGACACTGATTCATTGAAGAGAAAAGAGATATCTTGGCAAACCGTAGTGTTAGAACATGCAAGATCT
AACAAAAGCAAGGGTCGATA

Downstream 100 bases:

>100_bases
TTGAATTCTTGCTCAATACCTTCAGAGGGCTCTGGGTAAAAGCCAGAGCTCTATTCCCTTCAATACCGATGTAGATCACT
ATAGTTCATACTTTGTCATG

Product: putative restriction endonuclease

Products: NA

Alternate protein names: Type II Restriction HphI; HNH Endonuclease Family Protein; GTPase Subunit Of Restriction Endonuclease; Type II Restriction Endonuclease; Restriction Endonuclease-Like Protein; Site-Specific Deoxyribonuclease; Type II Restriction- System Restriction Subunit; Restiction Endonuclease

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MALEYYLDRFQNLKMNNAGGKKSPHKVCMLLAVMDLIQAGHILTNKVCLNQALKERFTHHFDNLAQGADKNTPENPFFHL
RSEGFWLLCFNDGYDNTSTSRYSAKAVSHAYIDDELFSYMKSYIVSNELKDALVSNLSDLATLYHQWLIDIGKSEKTAKN
YLGAIRGSISNWLMDVGELEAPLTDINSYREFVGYEEKARKLEQFQIRDSRGNGMYSAALSHYHQFLADLSQVDVNADIK
QVMTDKTLSETEKTILVNTRVGQGHFRSKLIQMWGGCAITGYRNTQLLLASHIKPWRDSSNEERLDKFNGLLLLANLDKA
FDLGFISFDDNGKVLISSYLESPDVIGLKEDMAFSIMPDHRPYLRYHRGELFKGR

Sequences:

>Translated_375_residues
MALEYYLDRFQNLKMNNAGGKKSPHKVCMLLAVMDLIQAGHILTNKVCLNQALKERFTHHFDNLAQGADKNTPENPFFHL
RSEGFWLLCFNDGYDNTSTSRYSAKAVSHAYIDDELFSYMKSYIVSNELKDALVSNLSDLATLYHQWLIDIGKSEKTAKN
YLGAIRGSISNWLMDVGELEAPLTDINSYREFVGYEEKARKLEQFQIRDSRGNGMYSAALSHYHQFLADLSQVDVNADIK
QVMTDKTLSETEKTILVNTRVGQGHFRSKLIQMWGGCAITGYRNTQLLLASHIKPWRDSSNEERLDKFNGLLLLANLDKA
FDLGFISFDDNGKVLISSYLESPDVIGLKEDMAFSIMPDHRPYLRYHRGELFKGR
>Mature_374_residues
ALEYYLDRFQNLKMNNAGGKKSPHKVCMLLAVMDLIQAGHILTNKVCLNQALKERFTHHFDNLAQGADKNTPENPFFHLR
SEGFWLLCFNDGYDNTSTSRYSAKAVSHAYIDDELFSYMKSYIVSNELKDALVSNLSDLATLYHQWLIDIGKSEKTAKNY
LGAIRGSISNWLMDVGELEAPLTDINSYREFVGYEEKARKLEQFQIRDSRGNGMYSAALSHYHQFLADLSQVDVNADIKQ
VMTDKTLSETEKTILVNTRVGQGHFRSKLIQMWGGCAITGYRNTQLLLASHIKPWRDSSNEERLDKFNGLLLLANLDKAF
DLGFISFDDNGKVLISSYLESPDVIGLKEDMAFSIMPDHRPYLRYHRGELFKGR

Specific function: Unknown

COG id: COG3440

COG function: function code V; Predicted restriction endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42814; Mature: 42683

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALEYYLDRFQNLKMNNAGGKKSPHKVCMLLAVMDLIQAGHILTNKVCLNQALKERFTHH
CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
FDNLAQGADKNTPENPFFHLRSEGFWLLCFNDGYDNTSTSRYSAKAVSHAYIDDELFSYM
HHHHHCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KSYIVSNELKDALVSNLSDLATLYHQWLIDIGKSEKTAKNYLGAIRGSISNWLMDVGELE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
APLTDINSYREFVGYEEKARKLEQFQIRDSRGNGMYSAALSHYHQFLADLSQVDVNADIK
CCHHHHHHHHHHHCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
QVMTDKTLSETEKTILVNTRVGQGHFRSKLIQMWGGCAITGYRNTQLLLASHIKPWRDSS
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHCCCCCCCCC
NEERLDKFNGLLLLANLDKAFDLGFISFDDNGKVLISSYLESPDVIGLKEDMAFSIMPDH
CHHHHHHHCCEEEEEECCCHHCCEEEEECCCCCEEEEEHHCCCCCEECCCCCEEEECCCC
RPYLRYHRGELFKGR
CHHHHHHCCCCCCCC
>Mature Secondary Structure 
ALEYYLDRFQNLKMNNAGGKKSPHKVCMLLAVMDLIQAGHILTNKVCLNQALKERFTHH
CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
FDNLAQGADKNTPENPFFHLRSEGFWLLCFNDGYDNTSTSRYSAKAVSHAYIDDELFSYM
HHHHHCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KSYIVSNELKDALVSNLSDLATLYHQWLIDIGKSEKTAKNYLGAIRGSISNWLMDVGELE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
APLTDINSYREFVGYEEKARKLEQFQIRDSRGNGMYSAALSHYHQFLADLSQVDVNADIK
CCHHHHHHHHHHHCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
QVMTDKTLSETEKTILVNTRVGQGHFRSKLIQMWGGCAITGYRNTQLLLASHIKPWRDSS
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHCCCCCCCCC
NEERLDKFNGLLLLANLDKAFDLGFISFDDNGKVLISSYLESPDVIGLKEDMAFSIMPDH
CHHHHHHHCCEEEEEECCCHHCCEEEEECCCCCEEEEEHHCCCCCEECCCCCEEEECCCC
RPYLRYHRGELFKGR
CHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA