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The map label for this gene is 218709633

Identifier: 218709633

GI number: 218709633

Start: 1765068

End: 1766747

Strand: Reverse

Name: 218709633

Synonym: VS_1643

Alternate gene names: NA

Gene position: 1766747-1765068 (Counterclockwise)

Preceding gene: 218709634

Following gene: 218709631

Centisome position: 53.55

GC content: 40.24

Gene sequence:

>1680_bases
TTGATTTTGGCTAGATTAATACCAAAAGTTAACATTGAAGATATCAGCGTTAAGTCGGAAAGGGATGTCGCTAGATTTTT
AGTAGATTTATTACCTGACGACTGTGTTATATACCATAGTTACCCATGGCTTAGAGTTGACAGAAATGACAAAGGTAGTA
CGACCCTCAAAGAAGGTGAAACGGATTTTGTAGTTATCATCCCTTCTCATGGAATGTTGGTGCTTGAGGTAAAGGGTGGT
GAAATTAGATATGAAAATGAAACTCGTGAATGGAGTAGGGTTTTACCTGATGGCAATCTAAGGTCAATTCAAGATCCATT
TGAACAGGCACGAAGAAATACTCACTTCTTGGAGAAGGAGATTAAGCAAAAGGGCTATAATGGAGCAAATAGTTTGCCAT
TTGGTTACGGTTATGCCGCTGTGTTTCCTGATTGTGAGTATAGAGGGGAGACTCCGGCAGGAGCTACGCCATCAGTCATA
TTATCTGCAAATGATCTTCCGTTTTTAGATAGAAGAATTAAGTCTGCCTTATCTCAATGGGTTAGGCGTGAAACCCCAGT
TCCTCTTTCAAAAGAGGATAGACAAAAAATTTACAAGTCCATTTCGCCAAGCTTTGATCTACTGCCCGTTCTTTTTCGAA
AAATAGAAGATCAAGAAGAAAAGCTATTTCGCCTTACTAACGACCAGCTCATGCTTTTGGATTTTTTATCGCATACACAA
AGAGCTTGTATTAATGGTGTAGCTGGATCAGGAAAAACAATGTTGGCACAAGCTCAAGCAGAGAGGTTTGCTGTTCAAGG
AATGAAGACCCTGCTCGTGTGTTACAACAAAGCCCTTGCAAAATGGTTGCGGGACAGTATCTCTCCTGTTTATGCTGACA
GTATCACGGTGACACATTTCCACGGTCTTTGCTCAGATTTATGTAGAAAAGCTGGAATTCCATTTAATCCTTCTACTCAA
AATGAAGACGAGTTCTGGCAGGAAGAAGCTCCAGATCTGTTGGTAGAAGCAATTGATGTTTTAGAAGATAGGTTTGATGC
TGTCATTGTTGATGAAGGCCAAGACTTTCAATCAGATTGGTGGATGCCATTAGAGCTTATCAATAGTAAGGGTGACGAGG
GGGCTATGTATGTCTTCTATGACCCCAATCAGAATTTATATGTATATCAAGAGCCTTCTTTACCTGCGTTAGGGCAGCCA
TTTAATCTTCCGGTAAACTGCCGTAATACTAAATCTATAGCCAGTTTTTGTAGCGAGATTTTGGATAAGCAGATCCCTAC
TAAAGGTGATGCACCTGTTGGAGATGAGCCAGTAGTTGCCCGATTGGATAACAAGTTTGAGATACAAAAACGAGTAGAAC
GATATGTACATGAATGGGTAAATAAAGGTAATTTAAAACCAAATCAAGTTGCGATATTGAGCCCTTTTAAGCAGAGTAAT
TCTTCCTTGGCTACATTAAGCAAAGCTAGAGGAGTCGAAATTACAGACGATATAGAACGTTGGCAGGAAGGAAAAGGGAT
CTTGTTCTCAACCGTAAAAGCGTTTAAAGGACTTGAGGCTGACGCAATACTGCTGATCGACATTCCTAATGAGGGGCATT
CTCCAATATTTCAACGCTCAGATTACTATGTGGCTTGCTCAAGAGCTAAACATTTATTGGTTGTTATGGGTGAGTCTTGA

Upstream 100 bases:

>100_bases
ACGCTTAAGGGCTTTGGTTCGACTGAGAAAGTTAAAATAAATGAAAGTGAGTGGCTGGATTTCATGCCACTAGCAATGGA
AGTCATATAAAAACAGGATA

Downstream 100 bases:

>100_bases
TTGCGCCGTGTGAAAAAATTTTGCTTTGATCTTCCAAAAGCTTCGTAAATTCCCACCAAAGTAACACCAGAGGTAACACT
TTAAAGTTTTACTTTTATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NERD Domain Protein; DNA Helicase II; Superfamily I DNA And RNA Helicase; Nerd Domain Protein; NERD Domain-Contain Protein; Helicase; Nuclease-Related Domain Family; DNA Helicase II Related Protein; DNA Helicase

Number of amino acids: Translated: 559; Mature: 559

Protein sequence:

>559_residues
MILARLIPKVNIEDISVKSERDVARFLVDLLPDDCVIYHSYPWLRVDRNDKGSTTLKEGETDFVVIIPSHGMLVLEVKGG
EIRYENETREWSRVLPDGNLRSIQDPFEQARRNTHFLEKEIKQKGYNGANSLPFGYGYAAVFPDCEYRGETPAGATPSVI
LSANDLPFLDRRIKSALSQWVRRETPVPLSKEDRQKIYKSISPSFDLLPVLFRKIEDQEEKLFRLTNDQLMLLDFLSHTQ
RACINGVAGSGKTMLAQAQAERFAVQGMKTLLVCYNKALAKWLRDSISPVYADSITVTHFHGLCSDLCRKAGIPFNPSTQ
NEDEFWQEEAPDLLVEAIDVLEDRFDAVIVDEGQDFQSDWWMPLELINSKGDEGAMYVFYDPNQNLYVYQEPSLPALGQP
FNLPVNCRNTKSIASFCSEILDKQIPTKGDAPVGDEPVVARLDNKFEIQKRVERYVHEWVNKGNLKPNQVAILSPFKQSN
SSLATLSKARGVEITDDIERWQEGKGILFSTVKAFKGLEADAILLIDIPNEGHSPIFQRSDYYVACSRAKHLLVVMGES

Sequences:

>Translated_559_residues
MILARLIPKVNIEDISVKSERDVARFLVDLLPDDCVIYHSYPWLRVDRNDKGSTTLKEGETDFVVIIPSHGMLVLEVKGG
EIRYENETREWSRVLPDGNLRSIQDPFEQARRNTHFLEKEIKQKGYNGANSLPFGYGYAAVFPDCEYRGETPAGATPSVI
LSANDLPFLDRRIKSALSQWVRRETPVPLSKEDRQKIYKSISPSFDLLPVLFRKIEDQEEKLFRLTNDQLMLLDFLSHTQ
RACINGVAGSGKTMLAQAQAERFAVQGMKTLLVCYNKALAKWLRDSISPVYADSITVTHFHGLCSDLCRKAGIPFNPSTQ
NEDEFWQEEAPDLLVEAIDVLEDRFDAVIVDEGQDFQSDWWMPLELINSKGDEGAMYVFYDPNQNLYVYQEPSLPALGQP
FNLPVNCRNTKSIASFCSEILDKQIPTKGDAPVGDEPVVARLDNKFEIQKRVERYVHEWVNKGNLKPNQVAILSPFKQSN
SSLATLSKARGVEITDDIERWQEGKGILFSTVKAFKGLEADAILLIDIPNEGHSPIFQRSDYYVACSRAKHLLVVMGES
>Mature_559_residues
MILARLIPKVNIEDISVKSERDVARFLVDLLPDDCVIYHSYPWLRVDRNDKGSTTLKEGETDFVVIIPSHGMLVLEVKGG
EIRYENETREWSRVLPDGNLRSIQDPFEQARRNTHFLEKEIKQKGYNGANSLPFGYGYAAVFPDCEYRGETPAGATPSVI
LSANDLPFLDRRIKSALSQWVRRETPVPLSKEDRQKIYKSISPSFDLLPVLFRKIEDQEEKLFRLTNDQLMLLDFLSHTQ
RACINGVAGSGKTMLAQAQAERFAVQGMKTLLVCYNKALAKWLRDSISPVYADSITVTHFHGLCSDLCRKAGIPFNPSTQ
NEDEFWQEEAPDLLVEAIDVLEDRFDAVIVDEGQDFQSDWWMPLELINSKGDEGAMYVFYDPNQNLYVYQEPSLPALGQP
FNLPVNCRNTKSIASFCSEILDKQIPTKGDAPVGDEPVVARLDNKFEIQKRVERYVHEWVNKGNLKPNQVAILSPFKQSN
SSLATLSKARGVEITDDIERWQEGKGILFSTVKAFKGLEADAILLIDIPNEGHSPIFQRSDYYVACSRAKHLLVVMGES

Specific function: Unknown

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63303; Mature: 63303

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILARLIPKVNIEDISVKSERDVARFLVDLLPDDCVIYHSYPWLRVDRNDKGSTTLKEGE
CCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCEECCC
TDFVVIIPSHGMLVLEVKGGEIRYENETREWSRVLPDGNLRSIQDPFEQARRNTHFLEKE
CCEEEEECCCCEEEEEECCCEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
IKQKGYNGANSLPFGYGYAAVFPDCEYRGETPAGATPSVILSANDLPFLDRRIKSALSQW
HHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
VRRETPVPLSKEDRQKIYKSISPSFDLLPVLFRKIEDQEEKLFRLTNDQLMLLDFLSHTQ
HHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
RACINGVAGSGKTMLAQAQAERFAVQGMKTLLVCYNKALAKWLRDSISPVYADSITVTHF
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHH
HGLCSDLCRKAGIPFNPSTQNEDEFWQEEAPDLLVEAIDVLEDRFDAVIVDEGQDFQSDW
HHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCC
WMPLELINSKGDEGAMYVFYDPNQNLYVYQEPSLPALGQPFNLPVNCRNTKSIASFCSEI
CCCHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LDKQIPTKGDAPVGDEPVVARLDNKFEIQKRVERYVHEWVNKGNLKPNQVAILSPFKQSN
HHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHCCC
SSLATLSKARGVEITDDIERWQEGKGILFSTVKAFKGLEADAILLIDIPNEGHSPIFQRS
CCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEECC
DYYVACSRAKHLLVVMGES
CCEEEECCCCEEEEEECCC
>Mature Secondary Structure
MILARLIPKVNIEDISVKSERDVARFLVDLLPDDCVIYHSYPWLRVDRNDKGSTTLKEGE
CCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCEECCC
TDFVVIIPSHGMLVLEVKGGEIRYENETREWSRVLPDGNLRSIQDPFEQARRNTHFLEKE
CCEEEEECCCCEEEEEECCCEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
IKQKGYNGANSLPFGYGYAAVFPDCEYRGETPAGATPSVILSANDLPFLDRRIKSALSQW
HHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
VRRETPVPLSKEDRQKIYKSISPSFDLLPVLFRKIEDQEEKLFRLTNDQLMLLDFLSHTQ
HHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
RACINGVAGSGKTMLAQAQAERFAVQGMKTLLVCYNKALAKWLRDSISPVYADSITVTHF
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHH
HGLCSDLCRKAGIPFNPSTQNEDEFWQEEAPDLLVEAIDVLEDRFDAVIVDEGQDFQSDW
HHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCC
WMPLELINSKGDEGAMYVFYDPNQNLYVYQEPSLPALGQPFNLPVNCRNTKSIASFCSEI
CCCHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LDKQIPTKGDAPVGDEPVVARLDNKFEIQKRVERYVHEWVNKGNLKPNQVAILSPFKQSN
HHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHCCC
SSLATLSKARGVEITDDIERWQEGKGILFSTVKAFKGLEADAILLIDIPNEGHSPIFQRS
CCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEECC
DYYVACSRAKHLLVVMGES
CCEEEECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA