| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is ygfF [H]
Identifier: 218709567
GI number: 218709567
Start: 1706924
End: 1707655
Strand: Reverse
Name: ygfF [H]
Synonym: VS_1577
Alternate gene names: 218709567
Gene position: 1707655-1706924 (Counterclockwise)
Preceding gene: 218709568
Following gene: 218709566
Centisome position: 51.76
GC content: 48.63
Gene sequence:
>732_bases TTGAACAAGGTAGTGATTGTAACAGGCGGGAGCCGAGGCATTGGCGCGGCGACATCTAAATTGTTGGCCAGTAAAGGTTA TGCCGTATGCGTTAACTTCATACACAATGAATCGCGAGCGGAAGAGCTAGTTAATGATATTCGTGAACAAGGCGGAACCG CTATCAGTGTTCGGGCGGATGTGTCTGTTGAATCGGACGTGAAATCCTTATTCGAGATTGCACGTAATAAGCTAGGCCCA GTGACTCACTTGGTCAATAATGCCGGGATCTTGTTTACCCAGTCACCTTTGGTTGACATCGAATTGGATCGCTTTGAAAA GGTGATGAAATCGAACGTATCAAGCTGCTTCCTTTGCAGTAAAGCCTTTATTAAACAAGCTGACGGTGCGGGTTCTATTG TGAATGTATCATCTGCTGCTTCGCGAACGGGCGCACCGTTTGAGTACGTGGATTACGCAGCATCGAAAGGTGCGATGGAT TCACTCACCAAAGGCTTATCGCTTGAATTGGCTTCACGCAATATCCGAGTGAATGGCGTAAGGCCAGGCTGTATTTATAC TGAGATGCACGCAGACGGCGGAGAGCCTGATCGCGTAGACAGACTCGCTTCGCAGTTACCATTACAACGAGGTGGCACAC CAGAAGAAGTCGCGAACTCTATCGCGTGGTTATTATCGGACGAAGCTTCGTATGTCACCGGCTCGTTTATTGATATTGCG GGCGGTCGATAG
Upstream 100 bases:
>100_bases TCGAACAATTAGTTTGTATCGATACGATCAGTTTGTAACGAAAAACCAGGTCGTATCAAATAATCAGGTTATAACAAACA AGTGGCATTAGGAGGTTTCA
Downstream 100 bases:
>100_bases GGCGCGTTGCCCTTTACACTCAGATAAACCAGTTTAAACCATAAACACGCAACACAAGTACCTAACTAAAAGAACGAAAC TAAGAGTACAAACATGAAAA
Product: Oxidoreductase, short-chain dehydrogenase/reductase family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MNKVVIVTGGSRGIGAATSKLLASKGYAVCVNFIHNESRAEELVNDIREQGGTAISVRADVSVESDVKSLFEIARNKLGP VTHLVNNAGILFTQSPLVDIELDRFEKVMKSNVSSCFLCSKAFIKQADGAGSIVNVSSAASRTGAPFEYVDYAASKGAMD SLTKGLSLELASRNIRVNGVRPGCIYTEMHADGGEPDRVDRLASQLPLQRGGTPEEVANSIAWLLSDEASYVTGSFIDIA GGR
Sequences:
>Translated_243_residues MNKVVIVTGGSRGIGAATSKLLASKGYAVCVNFIHNESRAEELVNDIREQGGTAISVRADVSVESDVKSLFEIARNKLGP VTHLVNNAGILFTQSPLVDIELDRFEKVMKSNVSSCFLCSKAFIKQADGAGSIVNVSSAASRTGAPFEYVDYAASKGAMD SLTKGLSLELASRNIRVNGVRPGCIYTEMHADGGEPDRVDRLASQLPLQRGGTPEEVANSIAWLLSDEASYVTGSFIDIA GGR >Mature_243_residues MNKVVIVTGGSRGIGAATSKLLASKGYAVCVNFIHNESRAEELVNDIREQGGTAISVRADVSVESDVKSLFEIARNKLGP VTHLVNNAGILFTQSPLVDIELDRFEKVMKSNVSSCFLCSKAFIKQADGAGSIVNVSSAASRTGAPFEYVDYAASKGAMD SLTKGLSLELASRNIRVNGVRPGCIYTEMHADGGEPDRVDRLASQLPLQRGGTPEEVANSIAWLLSDEASYVTGSFIDIA GGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=35.7723577235772, Blast_Score=119, Evalue=2e-27, Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=32.6693227091633, Blast_Score=105, Evalue=4e-23, Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=31.5573770491803, Blast_Score=104, Evalue=7e-23, Organism=Homo sapiens, GI7705925, Length=242, Percent_Identity=33.4710743801653, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=32.1428571428571, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=29.8387096774194, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=31.3008130081301, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI109715829, Length=244, Percent_Identity=28.6885245901639, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=28.6343612334802, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=28.2258064516129, Blast_Score=74, Evalue=8e-14, Organism=Homo sapiens, GI66933014, Length=249, Percent_Identity=32.1285140562249, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4758504, Length=257, Percent_Identity=28.4046692607004, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI142976729, Length=221, Percent_Identity=29.8642533936652, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI126723191, Length=190, Percent_Identity=30, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI4503817, Length=226, Percent_Identity=30.0884955752212, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI20149619, Length=234, Percent_Identity=29.0598290598291, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=30.9278350515464, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=55.9183673469388, Blast_Score=274, Evalue=4e-75, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=32.9268292682927, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1789378, Length=244, Percent_Identity=31.1475409836066, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI1790717, Length=243, Percent_Identity=31.6872427983539, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=33.8842975206612, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=32.9218106995885, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI2367365, Length=240, Percent_Identity=32.5, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=31.3253012048193, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=30.1204819277108, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=29.7297297297297, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=28.0487804878049, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787526, Length=250, Percent_Identity=28.4, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=27.8884462151394, Blast_Score=69, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=36.8852459016393, Blast_Score=127, Evalue=7e-30, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=36.0655737704918, Blast_Score=122, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=32.5301204819277, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=34.9593495934959, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=33.0645161290323, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=32.4, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=32.4, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17562910, Length=258, Percent_Identity=33.7209302325581, Blast_Score=103, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=33.7164750957854, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562906, Length=258, Percent_Identity=31.7829457364341, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17560332, Length=258, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562904, Length=257, Percent_Identity=32.295719844358, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17536025, Length=249, Percent_Identity=31.3253012048193, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=30.3501945525292, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=31.8007662835249, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=32.9501915708812, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560150, Length=254, Percent_Identity=32.2834645669291, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=32.295719844358, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17562908, Length=256, Percent_Identity=32.8125, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI193204405, Length=256, Percent_Identity=30.859375, Blast_Score=88, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17562990, Length=254, Percent_Identity=30.7086614173228, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=30.1526717557252, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17561272, Length=220, Percent_Identity=31.8181818181818, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17563726, Length=254, Percent_Identity=31.1023622047244, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17560220, Length=257, Percent_Identity=30.3501945525292, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI72000259, Length=256, Percent_Identity=28.515625, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=26.0536398467433, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI72001658, Length=213, Percent_Identity=28.169014084507, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=26.7716535433071, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17564282, Length=179, Percent_Identity=30.7262569832402, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=27.6, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=251, Percent_Identity=27.4900398406374, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=31.6062176165803, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=39.2857142857143, Blast_Score=130, Evalue=9e-31, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=36.1111111111111, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=37.3493975903614, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=33.1983805668016, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=33.6065573770492, Blast_Score=107, Evalue=6e-24, Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=36.5853658536585, Blast_Score=101, Evalue=5e-22, Organism=Drosophila melanogaster, GI21355319, Length=245, Percent_Identity=33.0612244897959, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24644337, Length=171, Percent_Identity=38.5964912280702, Blast_Score=87, Evalue=7e-18, Organism=Drosophila melanogaster, GI116007236, Length=241, Percent_Identity=29.045643153527, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=30.1960784313725, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI281364494, Length=202, Percent_Identity=30.1980198019802, Blast_Score=74, Evalue=6e-14, Organism=Drosophila melanogaster, GI28571387, Length=202, Percent_Identity=28.7128712871287, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641232, Length=204, Percent_Identity=31.3725490196078, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007238, Length=201, Percent_Identity=27.8606965174129, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25757; Mature: 25757
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKVVIVTGGSRGIGAATSKLLASKGYAVCVNFIHNESRAEELVNDIREQGGTAISVRAD CCEEEEEECCCCCCHHHHHHHHHCCCCEEEHHHHHCHHHHHHHHHHHHHCCCCEEEEEEC VSVESDVKSLFEIARNKLGPVTHLVNNAGILFTQSPLVDIELDRFEKVMKSNVSSCFLCS CCHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEECCCCEEEEHHHHHHHHHCCCHHHHHHH KAFIKQADGAGSIVNVSSAASRTGAPFEYVDYAASKGAMDSLTKGLSLELASRNIRVNGV HHHHHHCCCCCCEEECCCHHCCCCCCHHHHHHHHCCCCHHHHHCCCEEEEECCCEEEECC RPGCIYTEMHADGGEPDRVDRLASQLPLQRGGTPEEVANSIAWLLSDEASYVTGSFIDIA CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEECCCEEEEC GGR CCC >Mature Secondary Structure MNKVVIVTGGSRGIGAATSKLLASKGYAVCVNFIHNESRAEELVNDIREQGGTAISVRAD CCEEEEEECCCCCCHHHHHHHHHCCCCEEEHHHHHCHHHHHHHHHHHHHCCCCEEEEEEC VSVESDVKSLFEIARNKLGPVTHLVNNAGILFTQSPLVDIELDRFEKVMKSNVSSCFLCS CCHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEECCCCEEEEHHHHHHHHHCCCHHHHHHH KAFIKQADGAGSIVNVSSAASRTGAPFEYVDYAASKGAMDSLTKGLSLELASRNIRVNGV HHHHHHCCCCCCEEECCCHHCCCCCCHHHHHHHHCCCCHHHHHCCCEEEEECCCEEEECC RPGCIYTEMHADGGEPDRVDRLASQLPLQRGGTPEEVANSIAWLLSDEASYVTGSFIDIA CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEECCCEEEEC GGR CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]