Click here to switch to the map view.

The map label for this gene is yaiC [C]

Identifier: 218709470

GI number: 218709470

Start: 1611065

End: 1611931

Strand: Direct

Name: yaiC [C]

Synonym: VS_1479

Alternate gene names: 218709470

Gene position: 1611065-1611931 (Clockwise)

Preceding gene: 218709469

Following gene: 218709482

Centisome position: 48.83

GC content: 40.83

Gene sequence:

>867_bases
GTGCGATTACATATGCAAGCAAACCCTATCCTGTTAGTTGTGACTTTTATGCTGTTAGCGTCACTGTTGATGCTTGGCCT
GAGTTCATTTATTCATATTGATTCAAATTATGATTTGTTTTTCGAAACAAATACCCTCGTGATCACTATGTACATCTATT
ATGTTGCGCGTCACGCCATTCGTCCCCACAAAGCTCTTCGCTACGGCGCTCTATTACTCATTTTTAACCTGTTTTATGAC
GTATCAACCGAGCTTAAACATCTTGATGAGTGGGCTGACCAAAATGAACTAATAGATACCTTCTTGGAAGACGGGTTGCT
ACAAATAGCATTTTTATTGATCGCTTACGGTATTACTGAATTAACTGGCAAGATCAAAGACCAAGGTAAACGCGACGAGC
TTACTGGTTTGTATAATCGCAAGAAGTTTGACGCGATCAAACTTGCAGAGTTTGAGCTCATTTACTTCGACTTAGATGGA
CTAAAAGAGACAAATGACCTTAAAGGCCACAAAGTTGGAGATTTAATGATTGTTCGTTTCTCCCAGGCTCTGAGGCAAAC
TGCTTTGGAAGATGAAATGGTGTTTAGAGTGGGTGGTGATGAGTTTGTTGCAACGGCTCAACTCGGTCGTGGTGGTGAGT
TTGTCAGCCAAGTCAATAACTTACTGCATGGTGAGAACATCAGTTTTTCTTACGGTATCGAAGTGACCAACCGAGATAAT
TTTAAACAGGCATTGGTTGAATCCGATAAGGCGATGTACGAAATGAAAAAAGCTCAACGACCTGTTCAAAACTCTTGGTG
CACGTCTTGTCCTAATCTAGAAACAAATTACCTGAATATCGAGACAACAAGGCAAACCGATGACTAG

Upstream 100 bases:

>100_bases
TGTTAGCAAAAGTTTAATTGTTGCTAGTAAGTTAAATAAAGCGGCGTAAGCCGCTTTATTTTTATTCAAAATTTATATAG
GATTAAGCAAACAATACGAA

Downstream 100 bases:

>100_bases
AGCCTCATCTGAATAAATGTCAGTTTGCCACTGATAACTGTTGCTGATAACGAGCTCTCAAGTTCCAACCTTAAGCGGGT
CAATCAATTTATTGGCACAA

Product: GGDEF family protein

Products: NA

Alternate protein names: GGDEF Domain-Containing Protein; Diguanylate Cyclase With PAS/PAC Sensor; Diguanylate Cyclase With GAF Sensor; Diguanylate Cyclase/Phosphodiesterase; GGDEF Family Protein; Sensory Box/Ggdef Family Protein; Ggdef Domain Protein; Cyclic Diguanylate Phosphodiesterase Domain Protein; Diguanylate Cyclase And Metal Dependent Phosphohydrolase; Cyclic Nucleotide Phosphodiesterase; Signaling Protein; Response Regulatory Protein; Diguanylate Cyclase/Phosphodiesterase With MHYT Sensor; GAF/GGDEF-Domain-Containing Protein; Membrane Associated GGDEF Protein; Transmembrane Protein; Sensory Transduction Protein Kinase; Response Regulator Receiver Modulated Diguanylate Cyclase; GGDEF Domain Protein; Sensory Box Histidine Kinase; Diguanylate Cyclase With Extracellular Sensor; Response Regulator With A Diguanylate Cyclase Output Domain; Components Of Sensory Transduction System; Diguanylate Cyclase Domain Protein; Gaf/Ggdef-Domain Containing Protein; Response Regulator Receiver Protein

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MRLHMQANPILLVVTFMLLASLLMLGLSSFIHIDSNYDLFFETNTLVITMYIYYVARHAIRPHKALRYGALLLIFNLFYD
VSTELKHLDEWADQNELIDTFLEDGLLQIAFLLIAYGITELTGKIKDQGKRDELTGLYNRKKFDAIKLAEFELIYFDLDG
LKETNDLKGHKVGDLMIVRFSQALRQTALEDEMVFRVGGDEFVATAQLGRGGEFVSQVNNLLHGENISFSYGIEVTNRDN
FKQALVESDKAMYEMKKAQRPVQNSWCTSCPNLETNYLNIETTRQTDD

Sequences:

>Translated_288_residues
MRLHMQANPILLVVTFMLLASLLMLGLSSFIHIDSNYDLFFETNTLVITMYIYYVARHAIRPHKALRYGALLLIFNLFYD
VSTELKHLDEWADQNELIDTFLEDGLLQIAFLLIAYGITELTGKIKDQGKRDELTGLYNRKKFDAIKLAEFELIYFDLDG
LKETNDLKGHKVGDLMIVRFSQALRQTALEDEMVFRVGGDEFVATAQLGRGGEFVSQVNNLLHGENISFSYGIEVTNRDN
FKQALVESDKAMYEMKKAQRPVQNSWCTSCPNLETNYLNIETTRQTDD
>Mature_288_residues
MRLHMQANPILLVVTFMLLASLLMLGLSSFIHIDSNYDLFFETNTLVITMYIYYVARHAIRPHKALRYGALLLIFNLFYD
VSTELKHLDEWADQNELIDTFLEDGLLQIAFLLIAYGITELTGKIKDQGKRDELTGLYNRKKFDAIKLAEFELIYFDLDG
LKETNDLKGHKVGDLMIVRFSQALRQTALEDEMVFRVGGDEFVATAQLGRGGEFVSQVNNLLHGENISFSYGIEVTNRDN
FKQALVESDKAMYEMKKAQRPVQNSWCTSCPNLETNYLNIETTRQTDD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=26.6272189349112, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33064; Mature: 33064

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLHMQANPILLVVTFMLLASLLMLGLSSFIHIDSNYDLFFETNTLVITMYIYYVARHAI
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHHHHHHHC
RPHKALRYGALLLIFNLFYDVSTELKHLDEWADQNELIDTFLEDGLLQIAFLLIAYGITE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTGKIKDQGKRDELTGLYNRKKFDAIKLAEFELIYFDLDGLKETNDLKGHKVGDLMIVRF
HHHHHHCCCCCHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHH
SQALRQTALEDEMVFRVGGDEFVATAQLGRGGEFVSQVNNLLHGENISFSYGIEVTNRDN
HHHHHHHHCCCCEEEEECCCCEEEEHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCH
FKQALVESDKAMYEMKKAQRPVQNSWCTSCPNLETNYLNIETTRQTDD
HHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MRLHMQANPILLVVTFMLLASLLMLGLSSFIHIDSNYDLFFETNTLVITMYIYYVARHAI
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHHHHHHHC
RPHKALRYGALLLIFNLFYDVSTELKHLDEWADQNELIDTFLEDGLLQIAFLLIAYGITE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTGKIKDQGKRDELTGLYNRKKFDAIKLAEFELIYFDLDGLKETNDLKGHKVGDLMIVRF
HHHHHHCCCCCHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHH
SQALRQTALEDEMVFRVGGDEFVATAQLGRGGEFVSQVNNLLHGENISFSYGIEVTNRDN
HHHHHHHHCCCCEEEEECCCCEEEEHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCH
FKQALVESDKAMYEMKKAQRPVQNSWCTSCPNLETNYLNIETTRQTDD
HHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA