| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is 218709418
Identifier: 218709418
GI number: 218709418
Start: 1569136
End: 1570845
Strand: Direct
Name: 218709418
Synonym: VS_1427
Alternate gene names: NA
Gene position: 1569136-1570845 (Clockwise)
Preceding gene: 218709417
Following gene: 218709419
Centisome position: 47.56
GC content: 43.45
Gene sequence:
>1710_bases ATGACTTGTAATAAATTTAAATTAACAACAGTTGCAGCCTTAGTTTTGGCTGCAACTAACGCGAATGCTGCACTGTACAA GGTAGTTGAAGTCGCGACTCCTAGCTCAATTGTCGGAGCTTCTGAAACGTTTGGTGTCGCGATTCAACCAGCGGCGGTTA CCGGAACTGAAAGTTGTTTTACCAACGCTACTATCGGTGGTGTCGCATGTGATAGCTTTAAGCTAGCAGGTGAAACTCGT AATTCGCTTGAAGCCATTAGTTATCGTGAAGAAGTTCCTTTTGCTATGGATGCTGTCTTCCAATATTTACAAGAGTTCGA TGACTTCAAAAACTATTGTAACCGTGAACTAAGATATTCCACATGTGAAAGCTGGGCGAAAACTCGCTGGGAAGATACTT GGTTTAAGGAAAGAAACAACCTGAGTTATGTAAATGCAAAGGCATTTATAGAAGGCGGGGCAATACTCGATACTCGCAAT ACAGTGATCAACTCTCTAGATAAAGATGCCAACCCACTCGGTGTTAAGTCTGAGGGAACCATCCGAAACAATGCAATATT TACAACAACAGCCAAGCCTGCAGGATCTTCTGAGACTCGAGCATGGAAAGCCATCACAGCGAGTAATGGTACTGTTTACA ATGTAGGTAGTGTTTCTACTAGTGAAACCATTACGGAGACGTCAACGCCGGATCCTGTATTTAGTTCAAAAGCTGCTATT TGGGATGGTACGAATACCAAGCAAATCGATTGGACTCGTGGTGGAACTGCTAGACAAGGCGATTACTATGCTCAAGGTAG CATGCGTTCAATTGCCGAATCGGATACTAAGTTTTATGGCGTAGGCTACAATACTGTTGATGGTAGTGGTGATCTGCAAG ATATGAATGCATCTGTATTCATCAGTAAATCTCTGGACTTAGCTGACAGCGCGAATACTTGGACGACCAAATCAATTGAG GGGGCCAAGGTCAACTCTAACTCGTCTAATGATTACAAATACAGTAACTCTGTAGCGACCGATATCAACAAAAACTTGTT TGTTATTGGTAACTCTAAGCGTAATGGTCGAGTGCCTGAAAATGGTAGCGCAGGCAGTAAGATGTTCGTTGTTACTGATG CTTCAGTTGCGACTCCAACAGCGACATACCTAACGGGTGGTATCTTTTTTGCTGGTTCGAGTGGTGAAGCTAGAGCAGTT AACAACTTCAATGAAATTGTTGGTCAAGTTGACGCAGAAACAACGCGTGAAGTTGATGGAAGTGAGCGTAGACACCGCGG CTTTATTTATCCATATCAAGCAACGGGTACTGACCCATCAAGAATTGATCTGTTTCAGAACAAAGCTTGGTGGCTAGACG ATCTAACTAACGATGGCAACGTTTCTGGAGAGAACAACAAGTTCCGAATCATTGATGCTTCAGGTATCAACGATGCGGGT GTTATCTCTGCGACGGCTATCAAATGTGTTGTTGGCGGCACACCTAAACCATACGATACAACGTCTCACAACTCATACTG TGGCGGTGCTGCGTCTAATGCGGTTGAAAAGGTTGTTGCGGTTAAATTGATTCCTATCGAAGGTAAAGGTAAGAGCGATA TCCAAGCTCGTAGTACTGATACAGCAAAGGTCGATCGTAAAGGCGGTAGCTTAGGTTGGTTCGCTTTGACTGTACTCGGC TTATTAGGGTTCCGTAGAAAATTTAAATAA
Upstream 100 bases:
>100_bases AGTATTAGATAAGCTATCTGCAGCAGAGCAGGAGCTTGAAGTTGCTTTTGAGCGCTGGGAAGAGCTCGAGGCACTACAAC AGGAAAGTTAAGAAGTAATC
Downstream 100 bases:
>100_bases TTTCATCTCTTGAGCCCGAGTTCACAATTCTGAATTCGGGCTTTTTTTTCGCCTTGAGAAAAGTGAAAAACTGGTCGATT CTTAAAGTTGGAGTCACAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 569; Mature: 568
Protein sequence:
>569_residues MTCNKFKLTTVAALVLAATNANAALYKVVEVATPSSIVGASETFGVAIQPAAVTGTESCFTNATIGGVACDSFKLAGETR NSLEAISYREEVPFAMDAVFQYLQEFDDFKNYCNRELRYSTCESWAKTRWEDTWFKERNNLSYVNAKAFIEGGAILDTRN TVINSLDKDANPLGVKSEGTIRNNAIFTTTAKPAGSSETRAWKAITASNGTVYNVGSVSTSETITETSTPDPVFSSKAAI WDGTNTKQIDWTRGGTARQGDYYAQGSMRSIAESDTKFYGVGYNTVDGSGDLQDMNASVFISKSLDLADSANTWTTKSIE GAKVNSNSSNDYKYSNSVATDINKNLFVIGNSKRNGRVPENGSAGSKMFVVTDASVATPTATYLTGGIFFAGSSGEARAV NNFNEIVGQVDAETTREVDGSERRHRGFIYPYQATGTDPSRIDLFQNKAWWLDDLTNDGNVSGENNKFRIIDASGINDAG VISATAIKCVVGGTPKPYDTTSHNSYCGGAASNAVEKVVAVKLIPIEGKGKSDIQARSTDTAKVDRKGGSLGWFALTVLG LLGFRRKFK
Sequences:
>Translated_569_residues MTCNKFKLTTVAALVLAATNANAALYKVVEVATPSSIVGASETFGVAIQPAAVTGTESCFTNATIGGVACDSFKLAGETR NSLEAISYREEVPFAMDAVFQYLQEFDDFKNYCNRELRYSTCESWAKTRWEDTWFKERNNLSYVNAKAFIEGGAILDTRN TVINSLDKDANPLGVKSEGTIRNNAIFTTTAKPAGSSETRAWKAITASNGTVYNVGSVSTSETITETSTPDPVFSSKAAI WDGTNTKQIDWTRGGTARQGDYYAQGSMRSIAESDTKFYGVGYNTVDGSGDLQDMNASVFISKSLDLADSANTWTTKSIE GAKVNSNSSNDYKYSNSVATDINKNLFVIGNSKRNGRVPENGSAGSKMFVVTDASVATPTATYLTGGIFFAGSSGEARAV NNFNEIVGQVDAETTREVDGSERRHRGFIYPYQATGTDPSRIDLFQNKAWWLDDLTNDGNVSGENNKFRIIDASGINDAG VISATAIKCVVGGTPKPYDTTSHNSYCGGAASNAVEKVVAVKLIPIEGKGKSDIQARSTDTAKVDRKGGSLGWFALTVLG LLGFRRKFK >Mature_568_residues TCNKFKLTTVAALVLAATNANAALYKVVEVATPSSIVGASETFGVAIQPAAVTGTESCFTNATIGGVACDSFKLAGETRN SLEAISYREEVPFAMDAVFQYLQEFDDFKNYCNRELRYSTCESWAKTRWEDTWFKERNNLSYVNAKAFIEGGAILDTRNT VINSLDKDANPLGVKSEGTIRNNAIFTTTAKPAGSSETRAWKAITASNGTVYNVGSVSTSETITETSTPDPVFSSKAAIW DGTNTKQIDWTRGGTARQGDYYAQGSMRSIAESDTKFYGVGYNTVDGSGDLQDMNASVFISKSLDLADSANTWTTKSIEG AKVNSNSSNDYKYSNSVATDINKNLFVIGNSKRNGRVPENGSAGSKMFVVTDASVATPTATYLTGGIFFAGSSGEARAVN NFNEIVGQVDAETTREVDGSERRHRGFIYPYQATGTDPSRIDLFQNKAWWLDDLTNDGNVSGENNKFRIIDASGINDAGV ISATAIKCVVGGTPKPYDTTSHNSYCGGAASNAVEKVVAVKLIPIEGKGKSDIQARSTDTAKVDRKGGSLGWFALTVLGL LGFRRKFK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61094; Mature: 60963
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTCNKFKLTTVAALVLAATNANAALYKVVEVATPSSIVGASETFGVAIQPAAVTGTESCF CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHCCCCCCCCEEEECCEECCCHHHH TNATIGGVACDSFKLAGETRNSLEAISYREEVPFAMDAVFQYLQEFDDFKNYCNRELRYS CCCCCCCEEECCEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH TCESWAKTRWEDTWFKERNNLSYVNAKAFIEGGAILDTRNTVINSLDKDANPLGVKSEGT HHHHHHHCCCCHHHHHHCCCCEEEEEEEEECCCEEEECHHHHHHHHCCCCCCCCCCCCCC IRNNAIFTTTAKPAGSSETRAWKAITASNGTVYNVGSVSTSETITETSTPDPVFSSKAAI EECCEEEEEECCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCEECCCCCCCCCCCCEEE WDGTNTKQIDWTRGGTARQGDYYAQGSMRSIAESDTKFYGVGYNTVDGSGDLQDMNASVF ECCCCCCEEEECCCCCCCCCCEEECCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEE ISKSLDLADSANTWTTKSIEGAKVNSNSSNDYKYSNSVATDINKNLFVIGNSKRNGRVPE EEECCCCCCCCCCCEECCCCCCEECCCCCCCEEECCCEECCCCCCEEEEECCCCCCCCCC NGSAGSKMFVVTDASVATPTATYLTGGIFFAGSSGEARAVNNFNEIVGQVDAETTREVDG CCCCCCEEEEEECCCCCCCCHHHEECEEEEECCCCCCHHHHHHHHHHHCCCCHHHHCCCC SERRHRGFIYPYQATGTDPSRIDLFQNKAWWLDDLTNDGNVSGENNKFRIIDASGINDAG CCHHHCCEEEEEECCCCCCHHEEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCC VISATAIKCVVGGTPKPYDTTSHNSYCGGAASNAVEKVVAVKLIPIEGKGKSDIQARSTD EEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEEEEECCCCCCCCEECCCC TAKVDRKGGSLGWFALTVLGLLGFRRKFK CCEEECCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TCNKFKLTTVAALVLAATNANAALYKVVEVATPSSIVGASETFGVAIQPAAVTGTESCF CCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHCCCCCCCCEEEECCEECCCHHHH TNATIGGVACDSFKLAGETRNSLEAISYREEVPFAMDAVFQYLQEFDDFKNYCNRELRYS CCCCCCCEEECCEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH TCESWAKTRWEDTWFKERNNLSYVNAKAFIEGGAILDTRNTVINSLDKDANPLGVKSEGT HHHHHHHCCCCHHHHHHCCCCEEEEEEEEECCCEEEECHHHHHHHHCCCCCCCCCCCCCC IRNNAIFTTTAKPAGSSETRAWKAITASNGTVYNVGSVSTSETITETSTPDPVFSSKAAI EECCEEEEEECCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCEECCCCCCCCCCCCEEE WDGTNTKQIDWTRGGTARQGDYYAQGSMRSIAESDTKFYGVGYNTVDGSGDLQDMNASVF ECCCCCCEEEECCCCCCCCCCEEECCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEE ISKSLDLADSANTWTTKSIEGAKVNSNSSNDYKYSNSVATDINKNLFVIGNSKRNGRVPE EEECCCCCCCCCCCEECCCCCCEECCCCCCCEEECCCEECCCCCCEEEEECCCCCCCCCC NGSAGSKMFVVTDASVATPTATYLTGGIFFAGSSGEARAVNNFNEIVGQVDAETTREVDG CCCCCCEEEEEECCCCCCCCHHHEECEEEEECCCCCCHHHHHHHHHHHCCCCHHHHCCCC SERRHRGFIYPYQATGTDPSRIDLFQNKAWWLDDLTNDGNVSGENNKFRIIDASGINDAG CCHHHCCEEEEEECCCCCCHHEEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCC VISATAIKCVVGGTPKPYDTTSHNSYCGGAASNAVEKVVAVKLIPIEGKGKSDIQARSTD EEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEEEEECCCCCCCCEECCCC TAKVDRKGGSLGWFALTVLGLLGFRRKFK CCEEECCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA