| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is sglT [H]
Identifier: 218709234
GI number: 218709234
Start: 1333196
End: 1334965
Strand: Reverse
Name: sglT [H]
Synonym: VS_1241
Alternate gene names: 218709234
Gene position: 1334965-1333196 (Counterclockwise)
Preceding gene: 218709235
Following gene: 218709230
Centisome position: 40.46
GC content: 45.59
Gene sequence:
>1770_bases ATGACTATTGATACTTTTGTTGTTCTCGCCTACTTCTTCTTTTTAATCGCGATTGGTTGGATGTTCCGTAAGTTCACCAC CTCTACAAGTGATTACTTCAGAGGGGGCGGCAAAATGTTGTGGTGGATGGTTGGTGCAACCGCCTTCATGACACAGTTTT CAGCATGGACGTTTACAGGTGCCGCAGGACGCGCGTTCAATGACGGTTTCGTTATTGTAATCCTATTCCTAGCCAATGCT TTTGGCTACTTCATGAACTATATGTACTTCGCTCCAAAGTTCCGCCAACTTCGTGTAGTAACGGCGATCGAAGCCATTCG TCAACGCTTTGGTAAAACGTCTGAACAGTTCTTCACATGGGCAGGTATGCCTGACAGTCTTATCTCTGCAGGTATCTGGC TAAACGGTCTCGCTATCTTCGTAGCTGCTGTATTCAACATCCCAATGGAAGCAACCATTGTGGTAACGGGTATGGTTCTA GTATTGATGGCAGTAACAGGCGGCTCTTGGGCGGTTGTTGCTTCTGACTTCATGCAAATGCTTGTAATCATGGCCGTGAC AATCACTTGTGCGGTTGCGGCTTACTTCCACGGTGGTGGCTTAACTAACATCGTTGCTAACTTCGACGGCGACTTCATGT TAGGTAACAACCTAAACTACATGAGCATCTTCATCCTTTGGGTTGTGTTCATCTTCGTGAAGCAATTCGGTGTAATGAAC AACAGCATCAACGCTTACCGTTACCTATGTGCAAAAGACAGTGAAAACGCACGTAAAGCGGCAGGCCTAGCATGTATCCT TATGGTTGTTGGTCCACTAATTTGGTTCCTACCACCATGGTACGTAAGTGCATTCATGCCTGAGTTCGCATTAGAGTACG CTTCAATGGGTGATAAAGCGGGTGATGCTGCTTACCTAGCATTCGTACAGAACGTAATGCCAGCAGGTATGGTTGGTCTT CTTATGTCAGCAATGTTCGCTGCAACGATGTCTTCTATGGATTCAGGTTTGAACCGTAACGCTGGCATCTTTGTAATGAA CTTCTACAGCCCGATTCTTCGTCAAAATGCGACTCAGAAAGAGCTGGTTATTGTAAGTAAGCTAACGACTATTATGATGG GTGTTATCATCATCGCGATTGGCTTGTTCATTAACTCTCTACGTCACTTGAGCTTGTTCGATATCGTAATGAACGTAGGT GCGTTAATTGGCTTCCCAATGCTTATCCCTGTACTACTTGGTATGTGGATTCGTAAGACGCCTGACTGGGCTGGTTGGTC TACTCTCGTGGTTGGTGGTTTCGTTTCTTACATCTTCGGTATCTCGCTTCAAGCAGAAGACATCGAGCACCTATTCGGTA TGGAAACAGCGCTTACTGGCCGTGAATGGAGCGACTTGAAAGTAGGTCTTAGCTTAGCTGCTCACGTAGTGTTTACTGGT GGTTACTTCATGCTAACTTCTCGCTTCTACAAAGGCCTATCGCCTGAACGTGAGAAAGAAGTTGACCAACTATTCACTAA CTGGAACACACCATTAGTAGCGGAAGGTGAAGAGCAACAAAACCTAGATACTAAACAGCGTTCAATGCTCGGTAAGCTTA TCAGCACAGCAGGTTTCGGTATCCTAGCAATGGCTCTGATTCCAAACGAACCAACAGGACGCTTGTTGTTCCTACTATGT GGTTCGATGGTACTAACCGTTGGTATCCTACTGGTTAATGCGGCCAAAAACCCTGCAAAAAAGCTAAATGATGGAGCGAT TCTCAAATAG
Upstream 100 bases:
>100_bases TGCGCCCCAGATCACGATAAAGACATATTGTAGTACAAATAAACATGCAGAAGGAGTAATCTAGGTGTCAGTTAATTATG AAACTTAAAAGGCTGAAAAG
Downstream 100 bases:
>100_bases TATAGAGAAAGAACACTATTCGCTTAGCTGATATAACACATAAAATAATGCCCATGCTTCCCCCCGACAGCATGGGCTTT TTGTTGTTTTATCGAGGCTA
Product: putative sodium/substrate symport
Products: NA
Alternate protein names: Na(+)/glucose symporter [H]
Number of amino acids: Translated: 589; Mature: 588
Protein sequence:
>589_residues MTIDTFVVLAYFFFLIAIGWMFRKFTTSTSDYFRGGGKMLWWMVGATAFMTQFSAWTFTGAAGRAFNDGFVIVILFLANA FGYFMNYMYFAPKFRQLRVVTAIEAIRQRFGKTSEQFFTWAGMPDSLISAGIWLNGLAIFVAAVFNIPMEATIVVTGMVL VLMAVTGGSWAVVASDFMQMLVIMAVTITCAVAAYFHGGGLTNIVANFDGDFMLGNNLNYMSIFILWVVFIFVKQFGVMN NSINAYRYLCAKDSENARKAAGLACILMVVGPLIWFLPPWYVSAFMPEFALEYASMGDKAGDAAYLAFVQNVMPAGMVGL LMSAMFAATMSSMDSGLNRNAGIFVMNFYSPILRQNATQKELVIVSKLTTIMMGVIIIAIGLFINSLRHLSLFDIVMNVG ALIGFPMLIPVLLGMWIRKTPDWAGWSTLVVGGFVSYIFGISLQAEDIEHLFGMETALTGREWSDLKVGLSLAAHVVFTG GYFMLTSRFYKGLSPEREKEVDQLFTNWNTPLVAEGEEQQNLDTKQRSMLGKLISTAGFGILAMALIPNEPTGRLLFLLC GSMVLTVGILLVNAAKNPAKKLNDGAILK
Sequences:
>Translated_589_residues MTIDTFVVLAYFFFLIAIGWMFRKFTTSTSDYFRGGGKMLWWMVGATAFMTQFSAWTFTGAAGRAFNDGFVIVILFLANA FGYFMNYMYFAPKFRQLRVVTAIEAIRQRFGKTSEQFFTWAGMPDSLISAGIWLNGLAIFVAAVFNIPMEATIVVTGMVL VLMAVTGGSWAVVASDFMQMLVIMAVTITCAVAAYFHGGGLTNIVANFDGDFMLGNNLNYMSIFILWVVFIFVKQFGVMN NSINAYRYLCAKDSENARKAAGLACILMVVGPLIWFLPPWYVSAFMPEFALEYASMGDKAGDAAYLAFVQNVMPAGMVGL LMSAMFAATMSSMDSGLNRNAGIFVMNFYSPILRQNATQKELVIVSKLTTIMMGVIIIAIGLFINSLRHLSLFDIVMNVG ALIGFPMLIPVLLGMWIRKTPDWAGWSTLVVGGFVSYIFGISLQAEDIEHLFGMETALTGREWSDLKVGLSLAAHVVFTG GYFMLTSRFYKGLSPEREKEVDQLFTNWNTPLVAEGEEQQNLDTKQRSMLGKLISTAGFGILAMALIPNEPTGRLLFLLC GSMVLTVGILLVNAAKNPAKKLNDGAILK >Mature_588_residues TIDTFVVLAYFFFLIAIGWMFRKFTTSTSDYFRGGGKMLWWMVGATAFMTQFSAWTFTGAAGRAFNDGFVIVILFLANAF GYFMNYMYFAPKFRQLRVVTAIEAIRQRFGKTSEQFFTWAGMPDSLISAGIWLNGLAIFVAAVFNIPMEATIVVTGMVLV LMAVTGGSWAVVASDFMQMLVIMAVTITCAVAAYFHGGGLTNIVANFDGDFMLGNNLNYMSIFILWVVFIFVKQFGVMNN SINAYRYLCAKDSENARKAAGLACILMVVGPLIWFLPPWYVSAFMPEFALEYASMGDKAGDAAYLAFVQNVMPAGMVGLL MSAMFAATMSSMDSGLNRNAGIFVMNFYSPILRQNATQKELVIVSKLTTIMMGVIIIAIGLFINSLRHLSLFDIVMNVGA LIGFPMLIPVLLGMWIRKTPDWAGWSTLVVGGFVSYIFGISLQAEDIEHLFGMETALTGREWSDLKVGLSLAAHVVFTGG YFMLTSRFYKGLSPEREKEVDQLFTNWNTPLVAEGEEQQNLDTKQRSMLGKLISTAGFGILAMALIPNEPTGRLLFLLCG SMVLTVGILLVNAAKNPAKKLNDGAILK
Specific function: Actively transports glucose into cells by Na(+) cotransport [H]
COG id: COG0591
COG function: function code ER; Na+/proline symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]
Homologues:
Organism=Homo sapiens, GI17941285, Length=468, Percent_Identity=24.5726495726496, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI4507031, Length=465, Percent_Identity=24.7311827956989, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI14140236, Length=472, Percent_Identity=22.8813559322034, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI4507033, Length=469, Percent_Identity=23.454157782516, Blast_Score=90, Evalue=6e-18, Organism=Escherichia coli, GI1790113, Length=444, Percent_Identity=22.7477477477477, Blast_Score=86, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17539284, Length=428, Percent_Identity=23.8317757009346, Blast_Score=86, Evalue=7e-17, Organism=Drosophila melanogaster, GI221459586, Length=433, Percent_Identity=22.8637413394919, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI221459584, Length=365, Percent_Identity=23.2876712328767, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI24651739, Length=447, Percent_Identity=21.923937360179, Blast_Score=72, Evalue=2e-12, Organism=Drosophila melanogaster, GI221459588, Length=405, Percent_Identity=22.962962962963, Blast_Score=70, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001734 - InterPro: IPR018212 - InterPro: IPR019900 [H]
Pfam domain/function: PF00474 SSF [H]
EC number: NA
Molecular weight: Translated: 64884; Mature: 64752
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: PS50283 NA_SOLUT_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 6.3 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 6.1 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIDTFVVLAYFFFLIAIGWMFRKFTTSTSDYFRGGGKMLWWMVGATAFMTQFSAWTFTG CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHEEEC AAGRAFNDGFVIVILFLANAFGYFMNYMYFAPKFRQLRVVTAIEAIRQRFGKTSEQFFTW CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHEEE AGMPDSLISAGIWLNGLAIFVAAVFNIPMEATIVVTGMVLVLMAVTGGSWAVVASDFMQM CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LVIMAVTITCAVAAYFHGGGLTNIVANFDGDFMLGNNLNYMSIFILWVVFIFVKQFGVMN HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCC NSINAYRYLCAKDSENARKAAGLACILMVVGPLIWFLPPWYVSAFMPEFALEYASMGDKA CCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC GDAAYLAFVQNVMPAGMVGLLMSAMFAATMSSMDSGLNRNAGIFVMNFYSPILRQNATQK CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCHH ELVIVSKLTTIMMGVIIIAIGLFINSLRHLSLFDIVMNVGALIGFPMLIPVLLGMWIRKT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PDWAGWSTLVVGGFVSYIFGISLQAEDIEHLFGMETALTGREWSDLKVGLSLAAHVVFTG CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHCC GYFMLTSRFYKGLSPEREKEVDQLFTNWNTPLVAEGEEQQNLDTKQRSMLGKLISTAGFG HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCHHCCCCHHHHHHHHHHHHHCCHH ILAMALIPNEPTGRLLFLLCGSMVLTVGILLVNAAKNPAKKLNDGAILK HHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCC >Mature Secondary Structure TIDTFVVLAYFFFLIAIGWMFRKFTTSTSDYFRGGGKMLWWMVGATAFMTQFSAWTFTG CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHEEEC AAGRAFNDGFVIVILFLANAFGYFMNYMYFAPKFRQLRVVTAIEAIRQRFGKTSEQFFTW CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHEEE AGMPDSLISAGIWLNGLAIFVAAVFNIPMEATIVVTGMVLVLMAVTGGSWAVVASDFMQM CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LVIMAVTITCAVAAYFHGGGLTNIVANFDGDFMLGNNLNYMSIFILWVVFIFVKQFGVMN HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCC NSINAYRYLCAKDSENARKAAGLACILMVVGPLIWFLPPWYVSAFMPEFALEYASMGDKA CCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC GDAAYLAFVQNVMPAGMVGLLMSAMFAATMSSMDSGLNRNAGIFVMNFYSPILRQNATQK CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCHH ELVIVSKLTTIMMGVIIIAIGLFINSLRHLSLFDIVMNVGALIGFPMLIPVLLGMWIRKT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PDWAGWSTLVVGGFVSYIFGISLQAEDIEHLFGMETALTGREWSDLKVGLSLAAHVVFTG CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHCC GYFMLTSRFYKGLSPEREKEVDQLFTNWNTPLVAEGEEQQNLDTKQRSMLGKLISTAGFG HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCHHCCCCHHHHHHHHHHHHHCCHH ILAMALIPNEPTGRLLFLLCGSMVLTVGILLVNAAKNPAKKLNDGAILK HHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8652595; 10835424; 10757971 [H]