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The map label for this gene is ndpA [C]

Identifier: 218708947

GI number: 218708947

Start: 978183

End: 979187

Strand: Direct

Name: ndpA [C]

Synonym: VS_0951

Alternate gene names: 218708947

Gene position: 978183-979187 (Clockwise)

Preceding gene: 218708944

Following gene: 218708948

Centisome position: 29.65

GC content: 42.39

Gene sequence:

>1005_bases
ATGAGCCTTCACCTTTCCAACGTAATTTTACACCAGCTAAGCAAGAACGATCAGGAAGAGCTGATTGTTAACTATCGTGC
TGAATCTCTAGAAAACGATACTGCATCTGAAAACCTAGTCGCTGAACTTCACCGAGTTTTTAATTCAAAAGCAGGTAAAG
GATTTGGTTCTTTCAAATCCGACAGCGAATTCCAGCAGTCGTTGCATGAATTTCGAGCTGGAGAACAAAGTTTTTATGAT
TTCTCTCAAAAAAGTGCGCTACGTCTAAAAGATGAGCTTTCAAAGTATCCTTTTGCTGATGAAGGCACTTTGGTACTGGC
TGAATATCAATCACTGGCGACAGACTACCTTTTCATCGGACTACTGCCTTCAAACCAAAGTTTGAAAGTGACCGAAGGGC
TAGATATTAGTGCGACGGATTACCTGGATATCTCGAAGATGGATATTGTTGCGCGCCTTGATCTTTCAACATACGACACA
GACAAAGAGTCAAACCGTTACCTTACTTATATTAAAGGGCGCGTTGGTCGTAAAGTCGCTGACTTCTTCTTAGACTTCCT
TCAAGCAGAAGTAGGCTTGGATGCTAAGCAGCAAAACCAAGTATTGATGCAAGCGGTAGAAGACTTTGTTTCTGACTCTA
AGTTAGAGAAAGAAGAAGCGATCAGCTATAAAAAACAAGTTGCGGATTACTGTAACGAACAGCTTAAAGCGGGTGATGAA
GTTCAAGTTCGTGAACTTTCTGGAGAATTGCCAGCAAGCACAGATGGTACAAGCTTCTTTGACTATACTAGTGAGCAAGG
CTACGAGTTAGAAGACAGCTTCCCAGCAGACCGCGCAACTATGCGTAAACTAACAAAATTTGTTGGTGCTGGTGGCGGTT
TGAATGTTAGTTTTGATAGTCTGCTTTTAGGTGAGCGTATCTTCTACGATCCAGAGACAGACACGCTAACCATTAAAGGG
ACGCCACCGAACTTACGTGATCAACTGACTCGCAATAAGTCATAG

Upstream 100 bases:

>100_bases
TAGATATAATCGGCATAAGGACTCTAATAATGATAGTAAAAGCGGCTTATGATAACCTACTATGCACAACAACTGAAACC
TGAACGGTAATATTTTCGCT

Downstream 100 bases:

>100_bases
TCCGAAGTTATTAGGTCGCAAGCGACAGCCGGTTGTTGTCGCTTGTTTATGTTTAGCAACATAATGGTTTAGAGTTCGCA
TGAACAAGGAATATCGATGG

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSLHLSNVILHQLSKNDQEELIVNYRAESLENDTASENLVAELHRVFNSKAGKGFGSFKSDSEFQQSLHEFRAGEQSFYD
FSQKSALRLKDELSKYPFADEGTLVLAEYQSLATDYLFIGLLPSNQSLKVTEGLDISATDYLDISKMDIVARLDLSTYDT
DKESNRYLTYIKGRVGRKVADFFLDFLQAEVGLDAKQQNQVLMQAVEDFVSDSKLEKEEAISYKKQVADYCNEQLKAGDE
VQVRELSGELPASTDGTSFFDYTSEQGYELEDSFPADRATMRKLTKFVGAGGGLNVSFDSLLLGERIFYDPETDTLTIKG
TPPNLRDQLTRNKS

Sequences:

>Translated_334_residues
MSLHLSNVILHQLSKNDQEELIVNYRAESLENDTASENLVAELHRVFNSKAGKGFGSFKSDSEFQQSLHEFRAGEQSFYD
FSQKSALRLKDELSKYPFADEGTLVLAEYQSLATDYLFIGLLPSNQSLKVTEGLDISATDYLDISKMDIVARLDLSTYDT
DKESNRYLTYIKGRVGRKVADFFLDFLQAEVGLDAKQQNQVLMQAVEDFVSDSKLEKEEAISYKKQVADYCNEQLKAGDE
VQVRELSGELPASTDGTSFFDYTSEQGYELEDSFPADRATMRKLTKFVGAGGGLNVSFDSLLLGERIFYDPETDTLTIKG
TPPNLRDQLTRNKS
>Mature_333_residues
SLHLSNVILHQLSKNDQEELIVNYRAESLENDTASENLVAELHRVFNSKAGKGFGSFKSDSEFQQSLHEFRAGEQSFYDF
SQKSALRLKDELSKYPFADEGTLVLAEYQSLATDYLFIGLLPSNQSLKVTEGLDISATDYLDISKMDIVARLDLSTYDTD
KESNRYLTYIKGRVGRKVADFFLDFLQAEVGLDAKQQNQVLMQAVEDFVSDSKLEKEEAISYKKQVADYCNEQLKAGDEV
QVRELSGELPASTDGTSFFDYTSEQGYELEDSFPADRATMRKLTKFVGAGGGLNVSFDSLLLGERIFYDPETDTLTIKGT
PPNLRDQLTRNKS

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family

Homologues:

Organism=Escherichia coli, GI1788513, Length=334, Percent_Identity=53.5928143712575, Blast_Score=367, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDPA_VIBSL (B7VLR2)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002416568.1
- GeneID:   7160545
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_0951
- HOGENOM:   HBG296787
- OMA:   TDYLFIA
- ProtClustDB:   PRK00378
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00730
- InterPro:   IPR007358

Pfam domain/function: PF04245 NA37

EC number: NA

Molecular weight: Translated: 37571; Mature: 37440

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLHLSNVILHQLSKNDQEELIVNYRAESLENDTASENLVAELHRVFNSKAGKGFGSFKS
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
DSEFQQSLHEFRAGEQSFYDFSQKSALRLKDELSKYPFADEGTLVLAEYQSLATDYLFIG
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHCEEEEE
LLPSNQSLKVTEGLDISATDYLDISKMDIVARLDLSTYDTDKESNRYLTYIKGRVGRKVA
EECCCCCEEEECCCCCCCCCCCCCHHHHEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHH
DFFLDFLQAEVGLDAKQQNQVLMQAVEDFVSDSKLEKEEAISYKKQVADYCNEQLKAGDE
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
VQVRELSGELPASTDGTSFFDYTSEQGYELEDSFPADRATMRKLTKFVGAGGGLNVSFDS
EEHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHH
LLLGERIFYDPETDTLTIKGTPPNLRDQLTRNKS
HHHCCEEEECCCCCEEEEECCCCCHHHHHHCCCC
>Mature Secondary Structure 
SLHLSNVILHQLSKNDQEELIVNYRAESLENDTASENLVAELHRVFNSKAGKGFGSFKS
CCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
DSEFQQSLHEFRAGEQSFYDFSQKSALRLKDELSKYPFADEGTLVLAEYQSLATDYLFIG
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHCEEEEE
LLPSNQSLKVTEGLDISATDYLDISKMDIVARLDLSTYDTDKESNRYLTYIKGRVGRKVA
EECCCCCEEEECCCCCCCCCCCCCHHHHEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHH
DFFLDFLQAEVGLDAKQQNQVLMQAVEDFVSDSKLEKEEAISYKKQVADYCNEQLKAGDE
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
VQVRELSGELPASTDGTSFFDYTSEQGYELEDSFPADRATMRKLTKFVGAGGGLNVSFDS
EEHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHH
LLLGERIFYDPETDTLTIKGTPPNLRDQLTRNKS
HHHCCEEEECCCCCEEEEECCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA