| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is folD [H]
Identifier: 218708889
GI number: 218708889
Start: 914381
End: 915238
Strand: Reverse
Name: folD [H]
Synonym: VS_0889
Alternate gene names: 218708889
Gene position: 915238-914381 (Counterclockwise)
Preceding gene: 218708890
Following gene: 218708883
Centisome position: 27.74
GC content: 47.67
Gene sequence:
>858_bases ATGACTGCTCAAAATATTGATGGAAAGCTAATTTCTCAAACGGTTCGCTCTGAAGTTGCGGCTCGTGTAAAAGCTCGCAC TCAAGCTGGATTACGCGCTCCGGGCCTAGCGGTTGTTTTAGTGGGTGAAGACCCTGCTTCTCAGGTTTACGTAGGAAGTA AACGTAAAGCATGTGAAGAAGTTGGCTTCGTATCTAAATCTTACGACTTGCCAGCCACTGCGACAGAAGACGAATTATTA ACACTGGTAGACCAACTGAACGAAGACCCGGAGATTGACGGTATTCTTGTTCAACTTCCTCTACCAGCTGGTATTGATAG CACTCAAGTTCTTGAGCGCATAACGCCGGAAAAAGACGTTGATGGCTTCCACCCATACAACGTAGGTCGTTTGGCTCAGC GTATGCCTAAGCTTCGCTCTTGTACGCCTAAAGGCATCATTACGCTGCTTGACCGTTATAACATCGACTTACGTGGCAAA CACGCGGTTGTGGTTGGCGCATCAAACATCGTAGGTCGCCCAATGACGTTAGAGCTTCTTCTAGCCGGTTGTACAACGAC AACATGTCACCGCTTCACCAAAGACCTTGAGGGTCATGTACGTCAAGCAGATGTTGTTGTTGTAGCCGTTGGTAAGCCTA ACTTCATTCCTGGTGCTTGGATTAAGAAAGGTGCTGTTGTGGTCGATGTAGGCATCAATCGTTTGGAATCTGGCAAACTC GTTGGCGACGTTGAATACGATGTCGCGAAAGAGAGCGCAAGCTTCATCACACCAGTTCCGGGTGGTGTTGGTCCAATGAC AGTAGCAAGCCTAATCGAGAACACCATGATCGCTTGTGAGCAATTCCACTCTAAATAA
Upstream 100 bases:
>100_bases AACAAAGCAAACGTTTGCTTGATGGTAATCAAAAAGATTTTCTGGAATAATGCGCCAAAAACATCAGCCACTAACTTGAA TATCAATACTAAGGAAATTC
Downstream 100 bases:
>100_bases TCTGCGAACGACAGCATAAACAGAATTAAAAAGCCGCAGCGTTAAAACGTTGCGGCTTTTTTGATACTGAGCTATTCGTT TTTGATACAAAGTGACTCGC
Product: bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase
Products: NA
Alternate protein names: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase [H]
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MTAQNIDGKLISQTVRSEVAARVKARTQAGLRAPGLAVVLVGEDPASQVYVGSKRKACEEVGFVSKSYDLPATATEDELL TLVDQLNEDPEIDGILVQLPLPAGIDSTQVLERITPEKDVDGFHPYNVGRLAQRMPKLRSCTPKGIITLLDRYNIDLRGK HAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLEGHVRQADVVVVAVGKPNFIPGAWIKKGAVVVDVGINRLESGKL VGDVEYDVAKESASFITPVPGGVGPMTVASLIENTMIACEQFHSK
Sequences:
>Translated_285_residues MTAQNIDGKLISQTVRSEVAARVKARTQAGLRAPGLAVVLVGEDPASQVYVGSKRKACEEVGFVSKSYDLPATATEDELL TLVDQLNEDPEIDGILVQLPLPAGIDSTQVLERITPEKDVDGFHPYNVGRLAQRMPKLRSCTPKGIITLLDRYNIDLRGK HAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLEGHVRQADVVVVAVGKPNFIPGAWIKKGAVVVDVGINRLESGKL VGDVEYDVAKESASFITPVPGGVGPMTVASLIENTMIACEQFHSK >Mature_284_residues TAQNIDGKLISQTVRSEVAARVKARTQAGLRAPGLAVVLVGEDPASQVYVGSKRKACEEVGFVSKSYDLPATATEDELLT LVDQLNEDPEIDGILVQLPLPAGIDSTQVLERITPEKDVDGFHPYNVGRLAQRMPKLRSCTPKGIITLLDRYNIDLRGKH AVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLEGHVRQADVVVVAVGKPNFIPGAWIKKGAVVVDVGINRLESGKLV GDVEYDVAKESASFITPVPGGVGPMTVASLIENTMIACEQFHSK
Specific function: Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate [H]
COG id: COG0190
COG function: function code H; 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family [H]
Homologues:
Organism=Homo sapiens, GI222136639, Length=294, Percent_Identity=43.8775510204082, Blast_Score=226, Evalue=1e-59, Organism=Homo sapiens, GI222418558, Length=292, Percent_Identity=41.0958904109589, Blast_Score=216, Evalue=2e-56, Organism=Homo sapiens, GI94721354, Length=291, Percent_Identity=42.9553264604811, Blast_Score=214, Evalue=1e-55, Organism=Homo sapiens, GI36796743, Length=209, Percent_Identity=30.1435406698565, Blast_Score=89, Evalue=4e-18, Organism=Escherichia coli, GI1786741, Length=283, Percent_Identity=73.1448763250883, Blast_Score=434, Evalue=1e-123, Organism=Caenorhabditis elegans, GI17568735, Length=287, Percent_Identity=41.8118466898955, Blast_Score=188, Evalue=2e-48, Organism=Saccharomyces cerevisiae, GI6321643, Length=298, Percent_Identity=45.9731543624161, Blast_Score=246, Evalue=4e-66, Organism=Saccharomyces cerevisiae, GI6319558, Length=287, Percent_Identity=43.205574912892, Blast_Score=223, Evalue=2e-59, Organism=Saccharomyces cerevisiae, GI6322933, Length=312, Percent_Identity=27.5641025641026, Blast_Score=90, Evalue=4e-19, Organism=Drosophila melanogaster, GI17136816, Length=299, Percent_Identity=47.1571906354515, Blast_Score=251, Evalue=4e-67, Organism=Drosophila melanogaster, GI17136818, Length=299, Percent_Identity=47.1571906354515, Blast_Score=251, Evalue=5e-67, Organism=Drosophila melanogaster, GI24645718, Length=290, Percent_Identity=43.1034482758621, Blast_Score=216, Evalue=1e-56, Organism=Drosophila melanogaster, GI17137370, Length=290, Percent_Identity=43.1034482758621, Blast_Score=216, Evalue=1e-56, Organism=Drosophila melanogaster, GI62472483, Length=290, Percent_Identity=43.1034482758621, Blast_Score=216, Evalue=2e-56, Organism=Drosophila melanogaster, GI45551871, Length=290, Percent_Identity=43.1034482758621, Blast_Score=216, Evalue=2e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR000672 - InterPro: IPR020630 - InterPro: IPR020867 - InterPro: IPR020631 [H]
Pfam domain/function: PF00763 THF_DHG_CYH; PF02882 THF_DHG_CYH_C [H]
EC number: =1.5.1.5; =3.5.4.9 [H]
Molecular weight: Translated: 30549; Mature: 30417
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: PS00766 THF_DHG_CYH_1 ; PS00767 THF_DHG_CYH_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAQNIDGKLISQTVRSEVAARVKARTQAGLRAPGLAVVLVGEDPASQVYVGSKRKACEE CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEECCHHHHHHH VGFVSKSYDLPATATEDELLTLVDQLNEDPEIDGILVQLPLPAGIDSTQVLERITPEKDV HCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCC DGFHPYNVGRLAQRMPKLRSCTPKGIITLLDRYNIDLRGKHAVVVGASNIVGRPMTLELL CCCCCCCHHHHHHHCHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCCEEEHH LAGCTTTTCHRFTKDLEGHVRQADVVVVAVGKPNFIPGAWIKKGAVVVDVGINRLESGKL HHCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCHHHHCCCEEEEECCCCCCCCCE VGDVEYDVAKESASFITPVPGGVGPMTVASLIENTMIACEQFHSK EECCHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TAQNIDGKLISQTVRSEVAARVKARTQAGLRAPGLAVVLVGEDPASQVYVGSKRKACEE CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEECCHHHHHHH VGFVSKSYDLPATATEDELLTLVDQLNEDPEIDGILVQLPLPAGIDSTQVLERITPEKDV HCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCC DGFHPYNVGRLAQRMPKLRSCTPKGIITLLDRYNIDLRGKHAVVVGASNIVGRPMTLELL CCCCCCCHHHHHHHCHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCCEEEHH LAGCTTTTCHRFTKDLEGHVRQADVVVVAVGKPNFIPGAWIKKGAVVVDVGINRLESGKL HHCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCHHHHCCCEEEEECCCCCCCCCE VGDVEYDVAKESASFITPVPGGVGPMTVASLIENTMIACEQFHSK EECCHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA