| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218708792
Identifier: 218708792
GI number: 218708792
Start: 813005
End: 813511
Strand: Reverse
Name: 218708792
Synonym: VS_0791
Alternate gene names: NA
Gene position: 813511-813005 (Counterclockwise)
Preceding gene: 218708793
Following gene: 218708788
Centisome position: 24.66
GC content: 43.59
Gene sequence:
>507_bases ATGAGCCAGAATAATCTAATTGGTGCTACCGGTTACCGCTTTATCTCGAAAGGTAAGACCGCTTTTAAGATCCATATTCA TACACCCGACGATACGGTATTACATCGTTCAGTTGGCTTTGTTCGTATGGGGGAAGACAAAGCACTCAAGAAAACCATCA AATTAAGAGATGAGCTGGGTAGACAGCTTTGGGGCAAGTTTTGGCCAAAGGTCCTCAAAGAGCCCTATCTCATGACACGT CTGCCTCATAGTTTAGAGCCTAAAATTGTATTTAAGCCTAATCCAACGCAGAGTGACCCTGAACATCGCGACGAGTGCTA CATAGCGAAATGGCGTGTTTTCTCTGAGAATGGTGATTACAAATACAGAACAAAAGTATGCTCTATACGAAAACACGGGA GACTCGCAGCCTACAGCCAAACCAAACGAGCACTTCTTGAAGCTCACAAAGATGTGATTGAGCTGCTTATCTTTATGGGA CGATTGAACAGCATTGATCTGAAGTAG
Upstream 100 bases:
>100_bases AGCAAAAGTACTAAGGCTTTATTTTTTTCATGAGGATTAGTTTCGGTTTCGCGGTATTTGTCGTAATCTTATTAATAACA TAATCATCATTTAGCAAACT
Downstream 100 bases:
>100_bases TATCAACCTCGATAACTTCGTTAGAAATTTGGGATTCTGACTTACTGGAGTTGGTATTCGCTCTGAGAGGCTGATTATCA GATACAAAAACAGCCGCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MSQNNLIGATGYRFISKGKTAFKIHIHTPDDTVLHRSVGFVRMGEDKALKKTIKLRDELGRQLWGKFWPKVLKEPYLMTR LPHSLEPKIVFKPNPTQSDPEHRDECYIAKWRVFSENGDYKYRTKVCSIRKHGRLAAYSQTKRALLEAHKDVIELLIFMG RLNSIDLK
Sequences:
>Translated_168_residues MSQNNLIGATGYRFISKGKTAFKIHIHTPDDTVLHRSVGFVRMGEDKALKKTIKLRDELGRQLWGKFWPKVLKEPYLMTR LPHSLEPKIVFKPNPTQSDPEHRDECYIAKWRVFSENGDYKYRTKVCSIRKHGRLAAYSQTKRALLEAHKDVIELLIFMG RLNSIDLK >Mature_167_residues SQNNLIGATGYRFISKGKTAFKIHIHTPDDTVLHRSVGFVRMGEDKALKKTIKLRDELGRQLWGKFWPKVLKEPYLMTRL PHSLEPKIVFKPNPTQSDPEHRDECYIAKWRVFSENGDYKYRTKVCSIRKHGRLAAYSQTKRALLEAHKDVIELLIFMGR LNSIDLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19595; Mature: 19464
Theoretical pI: Translated: 10.52; Mature: 10.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQNNLIGATGYRFISKGKTAFKIHIHTPDDTVLHRSVGFVRMGEDKALKKTIKLRDELG CCCCCEECCCCHHHHHCCCEEEEEEEECCCCHHHHHCCCEEEECCCHHHHHHHHHHHHHH RQLWGKFWPKVLKEPYLMTRLPHSLEPKIVFKPNPTQSDPEHRDECYIAKWRVFSENGDY HHHHHHHHHHHHCCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCE KYRTKVCSIRKHGRLAAYSQTKRALLEAHKDVIELLIFMGRLNSIDLK EEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SQNNLIGATGYRFISKGKTAFKIHIHTPDDTVLHRSVGFVRMGEDKALKKTIKLRDELG CCCCEECCCCHHHHHCCCEEEEEEEECCCCHHHHHCCCEEEECCCHHHHHHHHHHHHHH RQLWGKFWPKVLKEPYLMTRLPHSLEPKIVFKPNPTQSDPEHRDECYIAKWRVFSENGDY HHHHHHHHHHHHCCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCE KYRTKVCSIRKHGRLAAYSQTKRALLEAHKDVIELLIFMGRLNSIDLK EEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA