| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is yfjG [C]
Identifier: 218708664
GI number: 218708664
Start: 669834
End: 670262
Strand: Direct
Name: yfjG [C]
Synonym: VS_0643
Alternate gene names: 218708664
Gene position: 669834-670262 (Clockwise)
Preceding gene: 218708662
Following gene: 218708665
Centisome position: 20.3
GC content: 44.76
Gene sequence:
>429_bases ATGCCAAAGGTTACTCGTTCAGCATTAGTGTCGTTTAGTGCCGACCAGATGTTCAGCTTGGTCAATGATGTTGCTCGTTA TCATGAGTTTTTGCCAGGGTGTTCTGGTTCACGTGTGATCGAATCTTCAGATTCAGCTATGGTGGCTTCGGTTGATGTAT CTAAAGCCGGTATCAGCAAAACATTTACTACGTCTAACCGTTTAGCGGATGGCGCTGAGATTTTGATGGAGCTGGTGGAC GGCCCATTTAAGAAACTGCAGGGCGGTTGGTATTTCACTCCGCTCGACGATCAAGCGTGTAAGGTTGAGCTTAAGTTAGA GTTTGAATTCTCTAGCCGAATGATTGAAATGGCATTTGGTAAGGTTTTCAATGAGCTGACGAGCAATATGGTCAGTGCTT TTACTCAACGAGCGAAACAGGTTTACTAA
Upstream 100 bases:
>100_bases TTGCACCCTAGTTGGGGAATCCTTTTTATTTGCGCTCTGGCCCAATACAATTAAAATTGCAGTTTGTGTTAATGTAACGC TGTCTTTAACAGGAGTCTAT
Downstream 100 bases:
>100_bases GCCATGACTATTGAATCAGATATGATCCACGTTGAGGTTGTGTTTGCACTTCCGCACGAACAGCGTGTGTTTACCTTGGT AGTGAACAAGAACGCGACCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 142; Mature: 141
Protein sequence:
>142_residues MPKVTRSALVSFSADQMFSLVNDVARYHEFLPGCSGSRVIESSDSAMVASVDVSKAGISKTFTTSNRLADGAEILMELVD GPFKKLQGGWYFTPLDDQACKVELKLEFEFSSRMIEMAFGKVFNELTSNMVSAFTQRAKQVY
Sequences:
>Translated_142_residues MPKVTRSALVSFSADQMFSLVNDVARYHEFLPGCSGSRVIESSDSAMVASVDVSKAGISKTFTTSNRLADGAEILMELVD GPFKKLQGGWYFTPLDDQACKVELKLEFEFSSRMIEMAFGKVFNELTSNMVSAFTQRAKQVY >Mature_141_residues PKVTRSALVSFSADQMFSLVNDVARYHEFLPGCSGSRVIESSDSAMVASVDVSKAGISKTFTTSNRLADGAEILMELVDG PFKKLQGGWYFTPLDDQACKVELKLEFEFSSRMIEMAFGKVFNELTSNMVSAFTQRAKQVY
Specific function: Unknown
COG id: COG2867
COG function: function code I; Oligoketide cyclase/lipid transport protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0083 family [H]
Homologues:
Organism=Escherichia coli, GI1788972, Length=142, Percent_Identity=63.3802816901408, Blast_Score=205, Evalue=1e-54, Organism=Caenorhabditis elegans, GI115532702, Length=140, Percent_Identity=29.2857142857143, Blast_Score=70, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005031 [H]
Pfam domain/function: PF03364 Polyketide_cyc [H]
EC number: NA
Molecular weight: Translated: 15717; Mature: 15586
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKVTRSALVSFSADQMFSLVNDVARYHEFLPGCSGSRVIESSDSAMVASVDVSKAGISK CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEEEEECCHHHCCCH TFTTSNRLADGAEILMELVDGPFKKLQGGWYFTPLDDQACKVELKLEFEFSSRMIEMAFG HCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEECCCCCCCEEEEEEEEECHHHHHHHHHHH KVFNELTSNMVSAFTQRAKQVY HHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PKVTRSALVSFSADQMFSLVNDVARYHEFLPGCSGSRVIESSDSAMVASVDVSKAGISK CCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEEEEECCHHHCCCH TFTTSNRLADGAEILMELVDGPFKKLQGGWYFTPLDDQACKVELKLEFEFSSRMIEMAFG HCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEECCCCCCCEEEEEEEEECHHHHHHHHHHH KVFNELTSNMVSAFTQRAKQVY HHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA