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The map label for this gene is rodZ [H]

Identifier: 218708640

GI number: 218708640

Start: 639769

End: 640743

Strand: Direct

Name: rodZ [H]

Synonym: VS_0618

Alternate gene names: 218708640

Gene position: 639769-640743 (Clockwise)

Preceding gene: 218708638

Following gene: 218708641

Centisome position: 19.39

GC content: 43.79

Gene sequence:

>975_bases
ATGAACACAGAACACGAAACACAAACAAAAGAAACTGTCGCTCCAGAAATCGAAGCGGGAACGCTGCTTAAAAATAAACG
AGAATCTCTTGGTTTAACACAAAAGCAGATTTCTGATCGTTTAAAGCTGCGCGTTACGCTGATCCAACAAATTGAAGAAA
ACCAATTCGAGTCAGATCAAGTTGCCACCTTTATGCGTGGCTACATTCGTTCATACGCGAAATACGTCAATCTTGACGAA
AAGGTCGTATTGAGCGCACTCCATCATGCCGGTGACGCTCAACATCAAGAACAAGAAATGTTGAGCTTTTCTCGTAAGAC
TAAAACCGAGAAGCACAACAGCCGTATTATGATCCTTACTTGGAGCATTTTTGCGGTAATTGCGGGTATCTCCTCACTGT
GGTGGTGGCAGAACCAACAACAAGACACCCTATCTCAATCTTTAGCTAATACTGAAAGCTCAGAAGAGCTAGCTGTAGAA
GAATCACTTGCCCCTGAATTCACCTCTTTAGAAGTGATTGAAGCTGAACAAAATGAAGAGGGTACTTCTGTAGTTGAAGA
TACTGATGACCTTGCTGCGATAAGCGATGCGGAAGATTCTGTTACTTCAACTGACGAAACTACTGCACAGCAAGCAACAG
AGACAGAACCAACTGCTGAAGTTGCTGCTAATGCTGCTAATGCTGCTAATACTGCTAATGCAGAAGCTGTTGAAGCAAGC
ACTGCGCCTGAAGCTGTGATTAACGAGTTAGTGATGCAGTTCTCTGCTGATTGCTGGATCCAAGTGAAAGATGCTTCGGG
CAAAACCTTGTCGACTGGCATCAAAAAAGCAGGTCAGTCGTTAAATCTATCAGGAACTGCGCCATATAAAGTGATTCTAG
GTGCGCCAGAGGGCGTATCGATGACATTTGCAAGTGAACCTGTCGACCTTTCTGGGTATACTTCAGGCAAAGTAGCTAGA
ATAACCTTACCTTAG

Upstream 100 bases:

>100_bases
ACAGGAAAAATTCCACATAAAGTGGGTTGTTAGATTGAGCTTAAACGACAATAAAAATGCTCTCATCAACCTGCGATAAT
ACTTTAGAAGTTCACTCTCT

Downstream 100 bases:

>100_bases
AGTTAATATGCAACACGAATCTCCTATTATTCGTCGCAAATCAACCCGTATTTATGTGGGTGATGTGCCGATCGGTGATG
GTGCACCAATTGCTGTGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MNTEHETQTKETVAPEIEAGTLLKNKRESLGLTQKQISDRLKLRVTLIQQIEENQFESDQVATFMRGYIRSYAKYVNLDE
KVVLSALHHAGDAQHQEQEMLSFSRKTKTEKHNSRIMILTWSIFAVIAGISSLWWWQNQQQDTLSQSLANTESSEELAVE
ESLAPEFTSLEVIEAEQNEEGTSVVEDTDDLAAISDAEDSVTSTDETTAQQATETEPTAEVAANAANAANTANAEAVEAS
TAPEAVINELVMQFSADCWIQVKDASGKTLSTGIKKAGQSLNLSGTAPYKVILGAPEGVSMTFASEPVDLSGYTSGKVAR
ITLP

Sequences:

>Translated_324_residues
MNTEHETQTKETVAPEIEAGTLLKNKRESLGLTQKQISDRLKLRVTLIQQIEENQFESDQVATFMRGYIRSYAKYVNLDE
KVVLSALHHAGDAQHQEQEMLSFSRKTKTEKHNSRIMILTWSIFAVIAGISSLWWWQNQQQDTLSQSLANTESSEELAVE
ESLAPEFTSLEVIEAEQNEEGTSVVEDTDDLAAISDAEDSVTSTDETTAQQATETEPTAEVAANAANAANTANAEAVEAS
TAPEAVINELVMQFSADCWIQVKDASGKTLSTGIKKAGQSLNLSGTAPYKVILGAPEGVSMTFASEPVDLSGYTSGKVAR
ITLP
>Mature_324_residues
MNTEHETQTKETVAPEIEAGTLLKNKRESLGLTQKQISDRLKLRVTLIQQIEENQFESDQVATFMRGYIRSYAKYVNLDE
KVVLSALHHAGDAQHQEQEMLSFSRKTKTEKHNSRIMILTWSIFAVIAGISSLWWWQNQQQDTLSQSLANTESSEELAVE
ESLAPEFTSLEVIEAEQNEEGTSVVEDTDDLAAISDAEDSVTSTDETTAQQATETEPTAEVAANAANAANTANAEAVEAS
TAPEAVINELVMQFSADCWIQVKDASGKTLSTGIKKAGQSLNLSGTAPYKVILGAPEGVSMTFASEPVDLSGYTSGKVAR
ITLP

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=352, Percent_Identity=32.1022727272727, Blast_Score=173, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 35277; Mature: 35277

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEHETQTKETVAPEIEAGTLLKNKRESLGLTQKQISDRLKLRVTLIQQIEENQFESDQ
CCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VATFMRGYIRSYAKYVNLDEKVVLSALHHAGDAQHQEQEMLSFSRKTKTEKHNSRIMILT
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCEEEEEH
WSIFAVIAGISSLWWWQNQQQDTLSQSLANTESSEELAVEESLAPEFTSLEVIEAEQNEE
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEECCCCCC
GTSVVEDTDDLAAISDAEDSVTSTDETTAQQATETEPTAEVAANAANAANTANAEAVEAS
CCCHHCCCHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHCCC
TAPEAVINELVMQFSADCWIQVKDASGKTLSTGIKKAGQSLNLSGTAPYKVILGAPEGVS
CCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCE
MTFASEPVDLSGYTSGKVARITLP
EEECCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MNTEHETQTKETVAPEIEAGTLLKNKRESLGLTQKQISDRLKLRVTLIQQIEENQFESDQ
CCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VATFMRGYIRSYAKYVNLDEKVVLSALHHAGDAQHQEQEMLSFSRKTKTEKHNSRIMILT
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCEEEEEH
WSIFAVIAGISSLWWWQNQQQDTLSQSLANTESSEELAVEESLAPEFTSLEVIEAEQNEE
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEECCCCCC
GTSVVEDTDDLAAISDAEDSVTSTDETTAQQATETEPTAEVAANAANAANTANAEAVEAS
CCCHHCCCHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHCCC
TAPEAVINELVMQFSADCWIQVKDASGKTLSTGIKKAGQSLNLSGTAPYKVILGAPEGVS
CCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCE
MTFASEPVDLSGYTSGKVARITLP
EEECCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA