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The map label for this gene is nifU [H]

Identifier: 218708630

GI number: 218708630

Start: 631808

End: 632185

Strand: Direct

Name: nifU [H]

Synonym: VS_0608

Alternate gene names: 218708630

Gene position: 631808-632185 (Clockwise)

Preceding gene: 218708629

Following gene: 218708631

Centisome position: 19.15

GC content: 41.53

Gene sequence:

>378_bases
ATGGCATATAGCGAAAAAGTAATTGATCACTACGAAAACCCACGTAATGTAGGTTCGTTTGATAAAGAAGACCCAAGTGT
AGGTAGCGGCATGGTTGGCGCACCGGCTTGTGGTGACGTAATGAAACTGCAAATCAAAGTATCTGCAGAAGGTATTATTG
AAGATGCAAAATTCAAGACTTACGGTTGCGGTAGCGCAATCGCTTCTAGCTCACTAGTTACAGAGTGGGTTAAAGGTAAA
AGTATTGATGAAGCAGCTGCTATTAAAAACTCTGAAATCGCAGAAGAGCTTGAGTTGCCACCAGTGAAAGTTCACTGTTC
AATTCTTGCTGAAGATGCAATCAAAGCAGCTGTTGCGGATTACAAAAAGAAGCACTAA

Upstream 100 bases:

>100_bases
GTCTCCTCTATGGGATATGTATAAAGAAGGGATTGATTTGAACACTGTTGAGTGGGCTCATCACTAATCTCACGGAAATA
GAGGATTCGAGGTAACTATC

Downstream 100 bases:

>100_bases
TCGCTTCAATACCGTAATTACGTCGACAAAAAAGTAATATTTGGGAGCATCCTTTGTGCTCCCCCTGAGTTCTCAATTTA
TATAAAACACAAGGTTGTAG

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MAYSEKVIDHYENPRNVGSFDKEDPSVGSGMVGAPACGDVMKLQIKVSAEGIIEDAKFKTYGCGSAIASSSLVTEWVKGK
SIDEAAAIKNSEIAEELELPPVKVHCSILAEDAIKAAVADYKKKH

Sequences:

>Translated_125_residues
MAYSEKVIDHYENPRNVGSFDKEDPSVGSGMVGAPACGDVMKLQIKVSAEGIIEDAKFKTYGCGSAIASSSLVTEWVKGK
SIDEAAAIKNSEIAEELELPPVKVHCSILAEDAIKAAVADYKKKH
>Mature_124_residues
AYSEKVIDHYENPRNVGSFDKEDPSVGSGMVGAPACGDVMKLQIKVSAEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKS
IDEAAAIKNSEIAEELELPPVKVHCSILAEDAIKAAVADYKKKH

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=123, Percent_Identity=73.1707317073171, Blast_Score=194, Evalue=1e-50,
Organism=Homo sapiens, GI24307953, Length=123, Percent_Identity=72.3577235772358, Blast_Score=191, Evalue=8e-50,
Organism=Escherichia coli, GI1788878, Length=125, Percent_Identity=88, Blast_Score=230, Evalue=3e-62,
Organism=Caenorhabditis elegans, GI17543474, Length=123, Percent_Identity=74.7967479674797, Blast_Score=197, Evalue=9e-52,
Organism=Saccharomyces cerevisiae, GI6325122, Length=124, Percent_Identity=70.1612903225807, Blast_Score=188, Evalue=2e-49,
Organism=Saccharomyces cerevisiae, GI6324800, Length=123, Percent_Identity=71.5447154471545, Blast_Score=183, Evalue=7e-48,
Organism=Drosophila melanogaster, GI21355597, Length=123, Percent_Identity=76.4227642276423, Blast_Score=202, Evalue=6e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13328; Mature: 13197

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSEKVIDHYENPRNVGSFDKEDPSVGSGMVGAPACGDVMKLQIKVSAEGIIEDAKFKT
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWVKGKSIDEAAAIKNSEIAEELELPPVKVHCSILAEDAIKAAVAD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YKKKH
HHCCC
>Mature Secondary Structure 
AYSEKVIDHYENPRNVGSFDKEDPSVGSGMVGAPACGDVMKLQIKVSAEGIIEDAKFKT
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWVKGKSIDEAAAIKNSEIAEELELPPVKVHCSILAEDAIKAAVAD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YKKKH
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]