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The map label for this gene is cph2 [H]

Identifier: 218708512

GI number: 218708512

Start: 498969

End: 500720

Strand: Direct

Name: cph2 [H]

Synonym: VS_0476

Alternate gene names: 218708512

Gene position: 498969-500720 (Clockwise)

Preceding gene: 218708511

Following gene: 218708513

Centisome position: 15.12

GC content: 44.06

Gene sequence:

>1752_bases
ATGGAACTGGTAATGACTTGGTTATGGGATAGGGCGTATGGCTACGGTATATATATCGTTGTTCTATTGCTGATAGGTCT
CATCTGCTGGCATATTTATTTACGTTACCAGTCATATATTGAACAGCTTCTTCTTGCTACACCTTCACCTCTTTATTTTG
TTGACATCCGAAGTGGTGAGATCTTGTACGCCAATCGCCAAGCCATGCAGTTGCTTGGTATCCGCCAAATCGGTACTCAC
TTTCGTTTTCCAACAGTGGAAGCTGAGAATAGTTTTCGTCATTACCTCACTGATCACATCAACTCTCGAACGTTTGAATA
TCTCTCGTCTTGGGTTCTTTCTGAATTTGAATCTTTTAAGATCAACTTGGTGGGTCGTAAGATCCACTTTAGAAGTAGAA
AGGCTTGGATGATACATGCTTCCCCTTATAAAAGTACCAACGAAGAGATTTCCCAAGAGGTTCGTGATCTCAATGTTGCT
CGTACCGCTTTGGATTCTTTATCTGAGTTGGTCTATGTCATCGATCAAAAGGGTGAATTGGTCGCGAGTAATCGAGCGTT
TAAAAAGTTTTGGCATGGTCGCCCTGAAGAGGGCACTTTAAGTGTGTCTAGTGGTGCCTTAAAAGGTCGTGTCAGTGAGC
GCTCATGGACCACAGACCAAGATGGTAAGGGGTGTCTCCTTGAAACTTATCAAAGTGTTTTGCTCTCGCAAAGTGGGGAA
ACCATAGGTACGCTCTCGATAAGTCACGATGTGACGGATTGGCATGACATGCAGCAACAACTGCGTGGGGAAATGGAAAA
GCGTAAAGATACTGAAGTTGCACTTGCACAACGTGACACCATTTTACAAAACATCTTGGAAGCGAGCCCTGACTCGATTG
GTATCTTCAACGAAAACATGGTTTACCAGGCGTGTAATAAGCCATTTGTGGCAGCGTTGGGTATTTCTGAAGTCAGTGAT
TTAGTGGGTAAACGTCTACAAGACGTAGTACCAAATAGCATTTATATGCGCGTATCAGAGAGTGATCATCAAGTGCTTCA
TCAAGGTAACTCGTTGCGTTACATCGACAAACTGGTTTCAAGTGATGGAGAGTTTACTTGGTATGATGTAGTGAAGTCGC
CTTTTAGAGACCCTGCATCGAGTACCAATGGTGTACTGATCATGGCACGTGATATCACAGAACGTTACCTCGCCGAGCAG
AAACTTGAAGAAGCCAATTTAGAGCTTGAGCGCCTCAGTTTTATGGATAGTTTAACTCAGGTATCCAATCGACGTCGCTT
CGATGAGCAGCTGTCTACATTGTGGCATCATCATGTGCGTGAGAAATTGCCGTTGACGATTATGCTGTGTGACATCGACT
TCTTTAAAGGCTATAACGATTTCTATGGACACCAACAAGGTGACGATGCTTTGATTCAGGTTTCACAAGCCTTTAAGCAG
GTGTTGAATCGCTCTTCGGATTGCGTGGCTCGATACGGTGGTGAAGAGTTTGGCTTTATTCTCCCAAACACAACCACAGA
AGGTGCGCTTATGGTCGCTCGTCGAATTCATGATGAAGTGCAAAAACTAGGACTCGCTCATGAGAAGTCGACAGTGTCAG
ACTCCATCACGGTGAGTATTGGTATTGTCTCTTATATACCAACACCTGATGACGAAATGGAGTCTGCTGTTGCCTTGGCT
GACAGTGCGTTGTATCAAGCGAAATCTGATGGTCGAAATCGTTCGATAGTGCATCCATACTCTATTCACTAA

Upstream 100 bases:

>100_bases
CCAATTGATAGGGATGGGTGACTGTAGGTAACAGCAGATAAAACCAACAAATAGTGGTAACATTTCCCTCACAGAATTTA
TAAGTATAGATTGAGAGCAG

Downstream 100 bases:

>100_bases
CTTTATAGAATGGGTAACTTAGTGACTCCGTCTTTTTCTTGTTTAGCATTTATATTACTTGGCTAATATTTATGTGGCTT
GGCTAGTATTGATATTGCTT

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 583; Mature: 583

Protein sequence:

>583_residues
MELVMTWLWDRAYGYGIYIVVLLLIGLICWHIYLRYQSYIEQLLLATPSPLYFVDIRSGEILYANRQAMQLLGIRQIGTH
FRFPTVEAENSFRHYLTDHINSRTFEYLSSWVLSEFESFKINLVGRKIHFRSRKAWMIHASPYKSTNEEISQEVRDLNVA
RTALDSLSELVYVIDQKGELVASNRAFKKFWHGRPEEGTLSVSSGALKGRVSERSWTTDQDGKGCLLETYQSVLLSQSGE
TIGTLSISHDVTDWHDMQQQLRGEMEKRKDTEVALAQRDTILQNILEASPDSIGIFNENMVYQACNKPFVAALGISEVSD
LVGKRLQDVVPNSIYMRVSESDHQVLHQGNSLRYIDKLVSSDGEFTWYDVVKSPFRDPASSTNGVLIMARDITERYLAEQ
KLEEANLELERLSFMDSLTQVSNRRRFDEQLSTLWHHHVREKLPLTIMLCDIDFFKGYNDFYGHQQGDDALIQVSQAFKQ
VLNRSSDCVARYGGEEFGFILPNTTTEGALMVARRIHDEVQKLGLAHEKSTVSDSITVSIGIVSYIPTPDDEMESAVALA
DSALYQAKSDGRNRSIVHPYSIH

Sequences:

>Translated_583_residues
MELVMTWLWDRAYGYGIYIVVLLLIGLICWHIYLRYQSYIEQLLLATPSPLYFVDIRSGEILYANRQAMQLLGIRQIGTH
FRFPTVEAENSFRHYLTDHINSRTFEYLSSWVLSEFESFKINLVGRKIHFRSRKAWMIHASPYKSTNEEISQEVRDLNVA
RTALDSLSELVYVIDQKGELVASNRAFKKFWHGRPEEGTLSVSSGALKGRVSERSWTTDQDGKGCLLETYQSVLLSQSGE
TIGTLSISHDVTDWHDMQQQLRGEMEKRKDTEVALAQRDTILQNILEASPDSIGIFNENMVYQACNKPFVAALGISEVSD
LVGKRLQDVVPNSIYMRVSESDHQVLHQGNSLRYIDKLVSSDGEFTWYDVVKSPFRDPASSTNGVLIMARDITERYLAEQ
KLEEANLELERLSFMDSLTQVSNRRRFDEQLSTLWHHHVREKLPLTIMLCDIDFFKGYNDFYGHQQGDDALIQVSQAFKQ
VLNRSSDCVARYGGEEFGFILPNTTTEGALMVARRIHDEVQKLGLAHEKSTVSDSITVSIGIVSYIPTPDDEMESAVALA
DSALYQAKSDGRNRSIVHPYSIH
>Mature_583_residues
MELVMTWLWDRAYGYGIYIVVLLLIGLICWHIYLRYQSYIEQLLLATPSPLYFVDIRSGEILYANRQAMQLLGIRQIGTH
FRFPTVEAENSFRHYLTDHINSRTFEYLSSWVLSEFESFKINLVGRKIHFRSRKAWMIHASPYKSTNEEISQEVRDLNVA
RTALDSLSELVYVIDQKGELVASNRAFKKFWHGRPEEGTLSVSSGALKGRVSERSWTTDQDGKGCLLETYQSVLLSQSGE
TIGTLSISHDVTDWHDMQQQLRGEMEKRKDTEVALAQRDTILQNILEASPDSIGIFNENMVYQACNKPFVAALGISEVSD
LVGKRLQDVVPNSIYMRVSESDHQVLHQGNSLRYIDKLVSSDGEFTWYDVVKSPFRDPASSTNGVLIMARDITERYLAEQ
KLEEANLELERLSFMDSLTQVSNRRRFDEQLSTLWHHHVREKLPLTIMLCDIDFFKGYNDFYGHQQGDDALIQVSQAFKQ
VLNRSSDCVARYGGEEFGFILPNTTTEGALMVARRIHDEVQKLGLAHEKSTVSDSITVSIGIVSYIPTPDDEMESAVALA
DSALYQAKSDGRNRSIVHPYSIH

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=38.75, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=180, Percent_Identity=33.3333333333333, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=36.4705882352941, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87081881, Length=193, Percent_Identity=33.160621761658, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1787802, Length=211, Percent_Identity=31.7535545023697, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI87082007, Length=190, Percent_Identity=32.1052631578947, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788085, Length=196, Percent_Identity=31.1224489795918, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=259, Percent_Identity=29.3436293436293, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1788381, Length=220, Percent_Identity=32.2727272727273, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI87081977, Length=196, Percent_Identity=34.1836734693878, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI48994928, Length=147, Percent_Identity=31.9727891156463, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787056, Length=161, Percent_Identity=31.6770186335404, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081974, Length=167, Percent_Identity=30.5389221556886, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787541, Length=210, Percent_Identity=28.0952380952381, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 66543; Mature: 66543

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVMTWLWDRAYGYGIYIVVLLLIGLICWHIYLRYQSYIEQLLLATPSPLYFVDIRSGE
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
ILYANRQAMQLLGIRQIGTHFRFPTVEAENSFRHYLTDHINSRTFEYLSSWVLSEFESFK
EEEECHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCEE
INLVGRKIHFRSRKAWMIHASPYKSTNEEISQEVRDLNVARTALDSLSELVYVIDQKGEL
EEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VASNRAFKKFWHGRPEEGTLSVSSGALKGRVSERSWTTDQDGKGCLLETYQSVLLSQSGE
EECCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
TIGTLSISHDVTDWHDMQQQLRGEMEKRKDTEVALAQRDTILQNILEASPDSIGIFNENM
EEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCH
VYQACNKPFVAALGISEVSDLVGKRLQDVVPNSIYMRVSESDHQVLHQGNSLRYIDKLVS
HHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCHHHHHHHHC
SDGEFTWYDVVKSPFRDPASSTNGVLIMARDITERYLAEQKLEEANLELERLSFMDSLTQ
CCCCEEHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VSNRRRFDEQLSTLWHHHVREKLPLTIMLCDIDFFKGYNDFYGHQQGDDALIQVSQAFKQ
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCHHHCCCCCCCHHHHHHHHHHHH
VLNRSSDCVARYGGEEFGFILPNTTTEGALMVARRIHDEVQKLGLAHEKSTVSDSITVSI
HHCCCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEEEE
GIVSYIPTPDDEMESAVALADSALYQAKSDGRNRSIVHPYSIH
EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MELVMTWLWDRAYGYGIYIVVLLLIGLICWHIYLRYQSYIEQLLLATPSPLYFVDIRSGE
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
ILYANRQAMQLLGIRQIGTHFRFPTVEAENSFRHYLTDHINSRTFEYLSSWVLSEFESFK
EEEECHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCEE
INLVGRKIHFRSRKAWMIHASPYKSTNEEISQEVRDLNVARTALDSLSELVYVIDQKGEL
EEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VASNRAFKKFWHGRPEEGTLSVSSGALKGRVSERSWTTDQDGKGCLLETYQSVLLSQSGE
EECCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
TIGTLSISHDVTDWHDMQQQLRGEMEKRKDTEVALAQRDTILQNILEASPDSIGIFNENM
EEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCH
VYQACNKPFVAALGISEVSDLVGKRLQDVVPNSIYMRVSESDHQVLHQGNSLRYIDKLVS
HHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCHHHHHHHHC
SDGEFTWYDVVKSPFRDPASSTNGVLIMARDITERYLAEQKLEEANLELERLSFMDSLTQ
CCCCEEHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VSNRRRFDEQLSTLWHHHVREKLPLTIMLCDIDFFKGYNDFYGHQQGDDALIQVSQAFKQ
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCHHHCCCCCCCHHHHHHHHHHHH
VLNRSSDCVARYGGEEFGFILPNTTTEGALMVARRIHDEVQKLGLAHEKSTVSDSITVSI
HHCCCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEEEE
GIVSYIPTPDDEMESAVALADSALYQAKSDGRNRSIVHPYSIH
EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]