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The map label for this gene is psd [H]

Identifier: 218708315

GI number: 218708315

Start: 251497

End: 252408

Strand: Reverse

Name: psd [H]

Synonym: VS_0253

Alternate gene names: 218708315

Gene position: 252408-251497 (Counterclockwise)

Preceding gene: 218708316

Following gene: 218708314

Centisome position: 7.65

GC content: 46.16

Gene sequence:

>912_bases
ATGGATAAGATTAAAGTTGGATTGCAGTACTGGATCCCACAACATGGCCTGACTCGTTTAGTTGGTAAACTGGCGTCTGC
TAAAGCGGGTGGTTTAACGACAGCGATCATTAACTGGTTCATCAAGCAATACAAAGTGAACATGGATGAAGCTCTGCATA
GCGATCCAAAACACTTTAAGACATTCAATGAATTCTTCGTACGTGAATTGAAAGAAGGCATGCGCCCTATCGCAGAAGGT
GACTCTGTTATTGTTCACCCTGCTGATGCACGTGTAAGTCAGTTTGGCCCAATTACTGATGGTCAACTGATTCAAGCTAA
AAACCATAACTACTCAGCACGTGAGTTGCTTGGTGGTGATGCAGACCTAGCCGATGAGTTTAAAGACGGTGAATTCGCAA
CGCTTTACTTGTCGCCAAGTGATTATCACCGTGTGCACATGCCATGCGACGGCACACTGCGTCAGATGATCTACGTTCCC
GGTGATCTTTTCTCAGTAAACCCGCTAACGGCAGAGAACGTTCCAAACCTATTCGCACGTAACGAACGTGTGGTTTGTAT
CTTTGATACTGAGTTTGGCCCAATGGCACAAGTGCTGGTTGGTGCAACTATCGTAGGTAGCATCGAGCAAGTATGGGCTG
GCACCATCACGCCACCTCGCGGTAACTCGGTTTACAAGTGGGATTACCCAGCACAAGGTGATAAATCTATTATCTTGAAG
AAAGGCGAAGAGATGGGTCGCTTCAAGCTTGGTTCAACGGTTATCAACCTGTTTGCTAAAGATGCAATCAAGTTTGACGA
CACTATGCAGAATGGTGAGAAAACCGTTCTAGGCACTCCTTTCGCGCACATTGCGGGTAAAGACGTTGAGACTGAAGCTG
TTGATTCAGCAGAGAACACAGACCAAGCTTAA

Upstream 100 bases:

>100_bases
CATTTACTGACAATTGGCGCGAACTTAAGTAACATCTCGCGCCCTAAACCGTCATCGACAGATTTAATTGAAAAACAATT
AGCATTGGAAAATTAATACA

Downstream 100 bases:

>100_bases
CGATCTGAGTTAACTCATTTAGTTTAAAGGCGCGTTACTTTTTCTATATCAGAGAAGAACGCGCCTTTTTCTGAACTCTA
CCAATTCGTTTCCTACTCAA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDKIKVGLQYWIPQHGLTRLVGKLASAKAGGLTTAIINWFIKQYKVNMDEALHSDPKHFKTFNEFFVRELKEGMRPIAEG
DSVIVHPADARVSQFGPITDGQLIQAKNHNYSARELLGGDADLADEFKDGEFATLYLSPSDYHRVHMPCDGTLRQMIYVP
GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIEQVWAGTITPPRGNSVYKWDYPAQGDKSIILK
KGEEMGRFKLGSTVINLFAKDAIKFDDTMQNGEKTVLGTPFAHIAGKDVETEAVDSAENTDQA

Sequences:

>Translated_303_residues
MDKIKVGLQYWIPQHGLTRLVGKLASAKAGGLTTAIINWFIKQYKVNMDEALHSDPKHFKTFNEFFVRELKEGMRPIAEG
DSVIVHPADARVSQFGPITDGQLIQAKNHNYSARELLGGDADLADEFKDGEFATLYLSPSDYHRVHMPCDGTLRQMIYVP
GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIEQVWAGTITPPRGNSVYKWDYPAQGDKSIILK
KGEEMGRFKLGSTVINLFAKDAIKFDDTMQNGEKTVLGTPFAHIAGKDVETEAVDSAENTDQA
>Mature_303_residues
MDKIKVGLQYWIPQHGLTRLVGKLASAKAGGLTTAIINWFIKQYKVNMDEALHSDPKHFKTFNEFFVRELKEGMRPIAEG
DSVIVHPADARVSQFGPITDGQLIQAKNHNYSARELLGGDADLADEFKDGEFATLYLSPSDYHRVHMPCDGTLRQMIYVP
GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIEQVWAGTITPPRGNSVYKWDYPAQGDKSIILK
KGEEMGRFKLGSTVINLFAKDAIKFDDTMQNGEKTVLGTPFAHIAGKDVETEAVDSAENTDQA

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=300, Percent_Identity=32, Blast_Score=130, Evalue=1e-30,
Organism=Escherichia coli, GI1790604, Length=283, Percent_Identity=58.6572438162544, Blast_Score=347, Evalue=6e-97,
Organism=Caenorhabditis elegans, GI71980843, Length=285, Percent_Identity=34.3859649122807, Blast_Score=126, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI71980840, Length=285, Percent_Identity=34.3859649122807, Blast_Score=126, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6321609, Length=241, Percent_Identity=30.2904564315353, Blast_Score=115, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6324160, Length=390, Percent_Identity=27.9487179487179, Blast_Score=100, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24649526, Length=307, Percent_Identity=31.2703583061889, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24649528, Length=307, Percent_Identity=31.2703583061889, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24649524, Length=307, Percent_Identity=31.2703583061889, Blast_Score=126, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 33495; Mature: 33495

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIKVGLQYWIPQHGLTRLVGKLASAKAGGLTTAIINWFIKQYKVNMDEALHSDPKHFK
CCCEEECCEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHH
TFNEFFVRELKEGMRPIAEGDSVIVHPADARVSQFGPITDGQLIQAKNHNYSARELLGGD
HHHHHHHHHHHHHCCHHHCCCEEEEECCCCCHHHCCCCCCCCEEEECCCCCHHHHHCCCC
ADLADEFKDGEFATLYLSPSDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAENVPNLFAR
CCHHHHCCCCCEEEEEECCCCCEEEECCCCHHHHHEEECCCCEEECCCCCCCCCCHHHHC
NERVVCIFDTEFGPMAQVLVGATIVGSIEQVWAGTITPPRGNSVYKWDYPAQGDKSIILK
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEE
KGEEMGRFKLGSTVINLFAKDAIKFDDTMQNGEKTVLGTPFAHIAGKDVETEAVDSAENT
CCCHHCCCHHHHHHHHHHHHHHHCCCHHHCCCCEEEEECCHHHHCCCCCCHHHHCCCCCC
DQA
CCC
>Mature Secondary Structure
MDKIKVGLQYWIPQHGLTRLVGKLASAKAGGLTTAIINWFIKQYKVNMDEALHSDPKHFK
CCCEEECCEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHH
TFNEFFVRELKEGMRPIAEGDSVIVHPADARVSQFGPITDGQLIQAKNHNYSARELLGGD
HHHHHHHHHHHHHCCHHHCCCEEEEECCCCCHHHCCCCCCCCEEEECCCCCHHHHHCCCC
ADLADEFKDGEFATLYLSPSDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAENVPNLFAR
CCHHHHCCCCCEEEEEECCCCCEEEECCCCHHHHHEEECCCCEEECCCCCCCCCCHHHHC
NERVVCIFDTEFGPMAQVLVGATIVGSIEQVWAGTITPPRGNSVYKWDYPAQGDKSIILK
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEE
KGEEMGRFKLGSTVINLFAKDAIKFDDTMQNGEKTVLGTPFAHIAGKDVETEAVDSAENT
CCCHHCCCHHHHHHHHHHHHHHHCCCHHHCCCCEEEEECCHHHHCCCCCCHHHHCCCCCC
DQA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA