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The map label for this gene is rfaS [C]

Identifier: 218708260

GI number: 218708260

Start: 191930

End: 192817

Strand: Direct

Name: rfaS [C]

Synonym: VS_0197

Alternate gene names: 218708260

Gene position: 191930-192817 (Clockwise)

Preceding gene: 218708259

Following gene: 218708261

Centisome position: 5.82

GC content: 34.35

Gene sequence:

>888_bases
ATGAACGATAAATTGAAACCGAAACTGGTTTTTGTAGGCTATAAGCAACAGTATGAAAAACTAGAAATTGATGTCCTATC
GTCTGATTATGAAAAGCATCATATTTTCCTAAGTAAGTGGCTAGTTAAATTAGTTTCCTTTTTATTTTTCTATAGTAAAA
AACACTATCATGAGGCTTATGGAGCGATCATAAGACGAAAAATAAAGGCACTAAATGGCTTCGATGTCATATTCACCACC
GATTCTCTGAGAGATATAAAGTCGATATCAAAGATTGATGGGAGGAAGGTGATTGTTTTTAGAAATGTCACAGATGGAAG
CCTGAACCACCACCTAAAAGGTTTTGAAACATATACTTTTGATGAAGGTGATGCAGCAAAGTATGACTTTAAGCATATTT
ACCTACCTATGCCTCAACTAAAAATCATCGATGAGATAGAAAAATCGTCTGATTTCGATGTTTCTTTTGTCGGCGTGGAT
AAAGGAAGGAAAGAAAAGGTTCAGAAAATAAAAGGTGCATTAGATGGTTTTAAGTGCAATTTTATTGTTTTTGACAAGAA
ACCGTCTTATTCCTATGTTGAATACCTAACTGTGATGCTCAATACCAAATGTGTATTGGAAATGGTTCTTGATGGACAGA
CGTCTGATACTATGAGGGTTAAAGAAGCGTTATATGCTCGAAAAAAAGTAATCACGAATAATACGAGCCTTTACAATCAC
CCTTTACACTCAAAAGATAACTTTCTTATATTTGACTCTCTAAATGAACTTGCTAGTAATATTGAAGGCTTTATCTCTAG
CGACTTTGACGAATCAGTTTTGATTAAGCTTGAAGATTACACTGTTGATGGTTTTTATCACAAACTCCTATCTGGCAATG
GCGAATAG

Upstream 100 bases:

>100_bases
ATGGCTGCAGCGTATGTTAGTTATTACGAGAAGGTAGTTGAAGGTAATAAAGCCAATAGTGCATTAGGAAGTATTGTCGA
GTCTTTTAAAAGGTTGCCTT

Downstream 100 bases:

>100_bases
ACTCATTATGAAAAAAATCATACGCAAGATTAAGAAGCTAATATTCATTCGTGATCAAAAAAAACAGAAGAATTTCCTTT
CTCGAAAATCAAACTTTACA

Product: lipopolysaccharide core biosynthesis

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MNDKLKPKLVFVGYKQQYEKLEIDVLSSDYEKHHIFLSKWLVKLVSFLFFYSKKHYHEAYGAIIRRKIKALNGFDVIFTT
DSLRDIKSISKIDGRKVIVFRNVTDGSLNHHLKGFETYTFDEGDAAKYDFKHIYLPMPQLKIIDEIEKSSDFDVSFVGVD
KGRKEKVQKIKGALDGFKCNFIVFDKKPSYSYVEYLTVMLNTKCVLEMVLDGQTSDTMRVKEALYARKKVITNNTSLYNH
PLHSKDNFLIFDSLNELASNIEGFISSDFDESVLIKLEDYTVDGFYHKLLSGNGE

Sequences:

>Translated_295_residues
MNDKLKPKLVFVGYKQQYEKLEIDVLSSDYEKHHIFLSKWLVKLVSFLFFYSKKHYHEAYGAIIRRKIKALNGFDVIFTT
DSLRDIKSISKIDGRKVIVFRNVTDGSLNHHLKGFETYTFDEGDAAKYDFKHIYLPMPQLKIIDEIEKSSDFDVSFVGVD
KGRKEKVQKIKGALDGFKCNFIVFDKKPSYSYVEYLTVMLNTKCVLEMVLDGQTSDTMRVKEALYARKKVITNNTSLYNH
PLHSKDNFLIFDSLNELASNIEGFISSDFDESVLIKLEDYTVDGFYHKLLSGNGE
>Mature_295_residues
MNDKLKPKLVFVGYKQQYEKLEIDVLSSDYEKHHIFLSKWLVKLVSFLFFYSKKHYHEAYGAIIRRKIKALNGFDVIFTT
DSLRDIKSISKIDGRKVIVFRNVTDGSLNHHLKGFETYTFDEGDAAKYDFKHIYLPMPQLKIIDEIEKSSDFDVSFVGVD
KGRKEKVQKIKGALDGFKCNFIVFDKKPSYSYVEYLTVMLNTKCVLEMVLDGQTSDTMRVKEALYARKKVITNNTSLYNH
PLHSKDNFLIFDSLNELASNIEGFISSDFDESVLIKLEDYTVDGFYHKLLSGNGE

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34165; Mature: 34165

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDKLKPKLVFVGYKQQYEKLEIDVLSSDYEKHHIFLSKWLVKLVSFLFFYSKKHYHEAY
CCCCCCCEEEEEECHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAIIRRKIKALNGFDVIFTTDSLRDIKSISKIDGRKVIVFRNVTDGSLNHHLKGFETYTF
HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCHHCCCCCEEEEE
DEGDAAKYDFKHIYLPMPQLKIIDEIEKSSDFDVSFVGVDKGRKEKVQKIKGALDGFKCN
CCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEE
FIVFDKKPSYSYVEYLTVMLNTKCVLEMVLDGQTSDTMRVKEALYARKKVITNNTSLYNH
EEEEECCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
PLHSKDNFLIFDSLNELASNIEGFISSDFDESVLIKLEDYTVDGFYHKLLSGNGE
CCCCCCCEEEEECHHHHHHHHHHHHCCCCCCEEEEEEEEEEEHHHHHHHHCCCCC
>Mature Secondary Structure
MNDKLKPKLVFVGYKQQYEKLEIDVLSSDYEKHHIFLSKWLVKLVSFLFFYSKKHYHEAY
CCCCCCCEEEEEECHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAIIRRKIKALNGFDVIFTTDSLRDIKSISKIDGRKVIVFRNVTDGSLNHHLKGFETYTF
HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCHHCCCCCEEEEE
DEGDAAKYDFKHIYLPMPQLKIIDEIEKSSDFDVSFVGVDKGRKEKVQKIKGALDGFKCN
CCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEE
FIVFDKKPSYSYVEYLTVMLNTKCVLEMVLDGQTSDTMRVKEALYARKKVITNNTSLYNH
EEEEECCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
PLHSKDNFLIFDSLNELASNIEGFISSDFDESVLIKLEDYTVDGFYHKLLSGNGE
CCCCCCCEEEEECHHHHHHHHHHHHCCCCCCEEEEEEEEEEEHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA