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The map label for this gene is radC [C]

Identifier: 218708245

GI number: 218708245

Start: 179352

End: 180026

Strand: Direct

Name: radC [C]

Synonym: VS_0182

Alternate gene names: 218708245

Gene position: 179352-180026 (Clockwise)

Preceding gene: 218708241

Following gene: 218708246

Centisome position: 5.44

GC content: 45.93

Gene sequence:

>675_bases
ATGCCTATAAGTAAAATGCCTGTTGAGTCGATGCCAAGAGAAAAGTTACTGAGTAGAGGCCCCGACTCCTTAAGTGATGC
GGAGTTGTTAGCGATATTTCTTCGAACGGGCACACAAGGAATGAATGTTTTAGAGCTATCAGACAAGTTGATCAAAGATT
TTGGTTCGCTTCGCCATCTTTTTTCTGCAACGGAGGCCGAGTTTTGTGCCCATAAAGGGATGGGGCAGGCGAAATATGTC
CAGTTGCAGGCTGTTTTGGAGATGACGCAACGTTATTTGGCCGAGACTTTATCTCGAGGGGATGCACTAACTAGCCCAAG
TCACACCAAGTTGTATCTTTCGAGTATATTGCGTGATCGCCAGCGAGAAGCCTTCTACATATTGTTCCTAGATAACCAAA
ACAGAGTAATAAAAGATGAAGTGATGTTTGAAGGAACCATCGATGCAGCATCTGTTTACCCGAGAGAAGTGGTTAAACGG
GCACTTCATCATAATGCTGCCGCTTTAATCCTAGCGCACAACCATCCTTCCGGTGTCGCAGAGCCAAGCCAAGCAGATAG
GCGAATTACACGTAGATTAACCGACGCATTGGCACTAGTGGACATCCGAATTCTCGACCATTTTGTCGTTGGAGATGGCG
AAGTTATCTCTTTTGCAGAGCGCGGATGGATTTGA

Upstream 100 bases:

>100_bases
TTTTGCTAGGCATTAGTCTTCTTTATAACGCTGTGGAAGCTCTCCGTAGACAAACGGATTAGGCTGATGGATCGTATTCA
TCACCTTAGATAGCCTTTAT

Downstream 100 bases:

>100_bases
ATCACATTTTAGGTTGTTAGTTGCGTTAAATCTGCTATCATTCCGCCCACATTTTAGAACCTTAAATCAGCTCTGATTAC
TCAAATAGCTGCCCTGTTCA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MPISKMPVESMPREKLLSRGPDSLSDAELLAIFLRTGTQGMNVLELSDKLIKDFGSLRHLFSATEAEFCAHKGMGQAKYV
QLQAVLEMTQRYLAETLSRGDALTSPSHTKLYLSSILRDRQREAFYILFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLTDALALVDIRILDHFVVGDGEVISFAERGWI

Sequences:

>Translated_224_residues
MPISKMPVESMPREKLLSRGPDSLSDAELLAIFLRTGTQGMNVLELSDKLIKDFGSLRHLFSATEAEFCAHKGMGQAKYV
QLQAVLEMTQRYLAETLSRGDALTSPSHTKLYLSSILRDRQREAFYILFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLTDALALVDIRILDHFVVGDGEVISFAERGWI
>Mature_223_residues
PISKMPVESMPREKLLSRGPDSLSDAELLAIFLRTGTQGMNVLELSDKLIKDFGSLRHLFSATEAEFCAHKGMGQAKYVQ
LQAVLEMTQRYLAETLSRGDALTSPSHTKLYLSSILRDRQREAFYILFLDNQNRVIKDEVMFEGTIDAASVYPREVVKRA
LHHNAAALILAHNHPSGVAEPSQADRRITRRLTDALALVDIRILDHFVVGDGEVISFAERGWI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=214, Percent_Identity=47.6635514018692, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1788312, Length=143, Percent_Identity=50.3496503496504, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI2367100, Length=143, Percent_Identity=50.3496503496504, Blast_Score=138, Evalue=2e-34,
Organism=Escherichia coli, GI1788997, Length=139, Percent_Identity=50.3597122302158, Blast_Score=136, Evalue=9e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y182_VIBSL (B7VHK2)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002415866.1
- ProteinModelPortal:   B7VHK2
- GeneID:   7159852
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_0182
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- ProtClustDB:   PRK00024
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25116; Mature: 24985

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPISKMPVESMPREKLLSRGPDSLSDAELLAIFLRTGTQGMNVLELSDKLIKDFGSLRHL
CCCCCCCHHCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
FSATEAEFCAHKGMGQAKYVQLQAVLEMTQRYLAETLSRGDALTSPSHTKLYLSSILRDR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
QREAFYILFLDNQNRVIKDEVMFEGTIDAASVYPREVVKRALHHNAAALILAHNHPSGVA
CCCEEEEEEECCCCCEEHHHHHCCCCCCHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCC
EPSQADRRITRRLTDALALVDIRILDHFVVGDGEVISFAERGWI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCC
>Mature Secondary Structure 
PISKMPVESMPREKLLSRGPDSLSDAELLAIFLRTGTQGMNVLELSDKLIKDFGSLRHL
CCCCCCHHCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
FSATEAEFCAHKGMGQAKYVQLQAVLEMTQRYLAETLSRGDALTSPSHTKLYLSSILRDR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
QREAFYILFLDNQNRVIKDEVMFEGTIDAASVYPREVVKRALHHNAAALILAHNHPSGVA
CCCEEEEEEECCCCCEEHHHHHCCCCCCHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCC
EPSQADRRITRRLTDALALVDIRILDHFVVGDGEVISFAERGWI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA