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The map label for this gene is yhgF [H]

Identifier: 218708217

GI number: 218708217

Start: 145214

End: 147544

Strand: Reverse

Name: yhgF [H]

Synonym: VS_0153

Alternate gene names: 218708217

Gene position: 147544-145214 (Counterclockwise)

Preceding gene: 218708218

Following gene: 218708213

Centisome position: 4.47

GC content: 49.34

Gene sequence:

>2331_bases
ATGAGCCAAGCTATCTGTCGACTGATTGCTGAAGAACTGAATGTTCGTTCAGAGCAAGTCACCGCCGCAGTAAACCTAAT
TGACGACGGTAATACCGTTCCCTTTATTGCCCGCTACCGTAAAGAAGTCACGGGTGGCTTAGACGATACCCAACTACGTA
ACCTTGACAGTCGCCTTTCATACCTTCGCGAACTAGACGATCGTCGCCAAACGATCCTGAAATCGATTCAAGACCAAGGC
AAACTCACGCCAGAACTGGAGCGTGATATCACTCAAGCCGACAGCAAGACGCGCCTTGAAGATTTATACCTGCCATACAA
ACCAAAGCGTCGTACCAAAGGTCAAATCGCAATCGAAGCAGGCTTAGAGCCACTTGCCGATACACTTTGGAATGAACCAC
AGCACGATCCTGAAACCGAAGCCGCTAACTTCATCAGCAGCGATAAAGGCATTGCTGATACTAAAGCCGCACTCGATGGG
GCACGTGCAATCGTGATGGAGCGTATTGCAGAAGACGCAAACCTACTTGAAAAAATTCGCCAACATCTAACGCGTAACTC
AGAACTCGTTTCACGTGTCGTGGCAGGGAAAGAGCAAGCAGGCGAGAAATTCAAAGACTATTTCGAACACAACGAAACAC
TCAACAAAGTGCCTTCTCACCGTGCGCTTGCTATGTTGCGAGGCCGAAATGAAGGCTTCCTAACGCTGGCAATGAATGCA
GACCCTGAACAAGAAGAAGGTGTACGCGGTTCATACTGCGAAAGCATCATCTCTGATCACTACGGTATTACCCTAAGCAG
CGCTCCTGCGGATGCATGGCGTAAACAAGTGATTAGCTGGGCATGGCGTATCAAGGTTTCTATGCACATGGAAACTGAGC
TGATGGGCGCGATGAAAGAACGCGGTGAAATCGAAGCGATTGAAGTGTTCGCAACCAACCTTAAAGACTTGTTGATGGCG
GCGCCTGCTGGCCCTCGAGCAACTTTGGGCTTAGATCCGGGTTTACGTACTGGTTCGAAAATCGCCGTGGTGGATTCAAC
CGGTAAGGTTCTAGCAACAGAAACCATTTACCCTCACCCACCACAGAAGCAATACGACAAATCTGCACACGTGGTTGAGC
AGATGGTTCGCCAGTTCAATGTTGATTTGATTGCGATTGGTAATGGTACCGCTTCACGCGAAACAGACAGCTTTGTTGCT
GATGTGATTAAGCGTGGCAACCTAACAGCACAGAAAATCATTGTCAGCGAAGCCGGCGCATCGGTTTACTCTGCTTCTGA
GCTAGCGGCAAAAGAATTCCCGAACATGGATGTCTCGATTCGTGGTGCGGTGTCTATTGCGCGTCGTCTACAAGACCCAC
TAGCAGAGCTTGTGAAGATTGACCCTAAATCGATCGGTGTGGGCCAATACCAACACGATGTGAGCCAAACCATGCTTGCT
AAGCGCCTAGATGCGATTGTCGAAGACTGTGTAAACGCCGTTGGTGTTGATGTGAATACCGCTTCTGCCGCGCTTCTGAC
TCGTGTCGCTGGTCTTTCTAGCACCATCGCTCAAAACATCGTCGACTTCCGTGATGAGAATGGTCGTTTCGAAGCGCGTA
CTACCTTGAAAAAAGTCGCTCGTTTAGGGCCAAAAGCCTTTGAACAATGTGCTGGCTTCCTGCGTATCATGGATGGTAAG
AACCCGCTAGATGCATCATCGGTTCACCCAGAAGCTTACCCATTGGTGAAAACCATCGCCGAGAAAAACCACAAAGACAT
CAAATCTCTGGTAGGTAACACAGACTTCTTACGTGGCTTACATGCGGTTGATTACACTAATGAGAATTTTGGTGTACCGA
CGGTAACCGACATCATCAAAGAGCTGGATAAACCGGGGCGAGATCCTCGTCCTGAGTTCAAGACGGCAACGTTCGCCGAT
GGCGTAAATAGCATGTCTGACTTGGAACCTGGCATGATCTTAGAAGGCGTGGTTTCAAACGTGGCTAACTTCGGTGCGTT
CGTAGATATTGGTGTTCACCAAGACGGCTTGGTGCATATTTCAGCGCTGACCGATCGCTTTGTCTCTGACCCACGAGAAG
TGGTGAAAGCGGGTGATATCGTGAAAGTGAAGGTGATGGAAGTGGATGTTCAGCGTAAACGTATTGCACTAAGCATGCGC
ATGAAAGATGAACCTGGACAAGATAACCGCGCACAACGTTCAAGTGCACCTCGCACACAAAACCGCCCGAACCAAAACTC
ACAAGGTGGACAACGCCGTCGTGAGGAACCACAACAAAACGCGGCGATGGGTGGTGCATTCGCTGCTGCTTTTGCAAAAG
CGAAAAAGTAA

Upstream 100 bases:

>100_bases
GAAATTGGACTTCTGACAGGATAATTACACAGTCAAAGCTAGAAAAAGCGTACGCTCACCCCCATGTATTTGTCATGATA
TTAAATAAGAGATTCATCGG

Downstream 100 bases:

>100_bases
TCCGTTAACTCGTCTGCAAAACAGATATGCTTAAAACAGAAAACCTGCATCCCTTAGGGTATGCAGGTTTTTTTATTATG
TGTTCAAAAGAGACATCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 776; Mature: 775

Protein sequence:

>776_residues
MSQAICRLIAEELNVRSEQVTAAVNLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLSYLRELDDRRQTILKSIQDQG
KLTPELERDITQADSKTRLEDLYLPYKPKRRTKGQIAIEAGLEPLADTLWNEPQHDPETEAANFISSDKGIADTKAALDG
ARAIVMERIAEDANLLEKIRQHLTRNSELVSRVVAGKEQAGEKFKDYFEHNETLNKVPSHRALAMLRGRNEGFLTLAMNA
DPEQEEGVRGSYCESIISDHYGITLSSAPADAWRKQVISWAWRIKVSMHMETELMGAMKERGEIEAIEVFATNLKDLLMA
APAGPRATLGLDPGLRTGSKIAVVDSTGKVLATETIYPHPPQKQYDKSAHVVEQMVRQFNVDLIAIGNGTASRETDSFVA
DVIKRGNLTAQKIIVSEAGASVYSASELAAKEFPNMDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTMLA
KRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSSTIAQNIVDFRDENGRFEARTTLKKVARLGPKAFEQCAGFLRIMDGK
NPLDASSVHPEAYPLVKTIAEKNHKDIKSLVGNTDFLRGLHAVDYTNENFGVPTVTDIIKELDKPGRDPRPEFKTATFAD
GVNSMSDLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVMEVDVQRKRIALSMR
MKDEPGQDNRAQRSSAPRTQNRPNQNSQGGQRRREEPQQNAAMGGAFAAAFAKAKK

Sequences:

>Translated_776_residues
MSQAICRLIAEELNVRSEQVTAAVNLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLSYLRELDDRRQTILKSIQDQG
KLTPELERDITQADSKTRLEDLYLPYKPKRRTKGQIAIEAGLEPLADTLWNEPQHDPETEAANFISSDKGIADTKAALDG
ARAIVMERIAEDANLLEKIRQHLTRNSELVSRVVAGKEQAGEKFKDYFEHNETLNKVPSHRALAMLRGRNEGFLTLAMNA
DPEQEEGVRGSYCESIISDHYGITLSSAPADAWRKQVISWAWRIKVSMHMETELMGAMKERGEIEAIEVFATNLKDLLMA
APAGPRATLGLDPGLRTGSKIAVVDSTGKVLATETIYPHPPQKQYDKSAHVVEQMVRQFNVDLIAIGNGTASRETDSFVA
DVIKRGNLTAQKIIVSEAGASVYSASELAAKEFPNMDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTMLA
KRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSSTIAQNIVDFRDENGRFEARTTLKKVARLGPKAFEQCAGFLRIMDGK
NPLDASSVHPEAYPLVKTIAEKNHKDIKSLVGNTDFLRGLHAVDYTNENFGVPTVTDIIKELDKPGRDPRPEFKTATFAD
GVNSMSDLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVMEVDVQRKRIALSMR
MKDEPGQDNRAQRSSAPRTQNRPNQNSQGGQRRREEPQQNAAMGGAFAAAFAKAKK
>Mature_775_residues
SQAICRLIAEELNVRSEQVTAAVNLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLSYLRELDDRRQTILKSIQDQGK
LTPELERDITQADSKTRLEDLYLPYKPKRRTKGQIAIEAGLEPLADTLWNEPQHDPETEAANFISSDKGIADTKAALDGA
RAIVMERIAEDANLLEKIRQHLTRNSELVSRVVAGKEQAGEKFKDYFEHNETLNKVPSHRALAMLRGRNEGFLTLAMNAD
PEQEEGVRGSYCESIISDHYGITLSSAPADAWRKQVISWAWRIKVSMHMETELMGAMKERGEIEAIEVFATNLKDLLMAA
PAGPRATLGLDPGLRTGSKIAVVDSTGKVLATETIYPHPPQKQYDKSAHVVEQMVRQFNVDLIAIGNGTASRETDSFVAD
VIKRGNLTAQKIIVSEAGASVYSASELAAKEFPNMDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTMLAK
RLDAIVEDCVNAVGVDVNTASAALLTRVAGLSSTIAQNIVDFRDENGRFEARTTLKKVARLGPKAFEQCAGFLRIMDGKN
PLDASSVHPEAYPLVKTIAEKNHKDIKSLVGNTDFLRGLHAVDYTNENFGVPTVTDIIKELDKPGRDPRPEFKTATFADG
VNSMSDLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVMEVDVQRKRIALSMRM
KDEPGQDNRAQRSSAPRTQNRPNQNSQGGQRRREEPQQNAAMGGAFAAAFAKAKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=802, Percent_Identity=32.4189526184539, Blast_Score=389, Evalue=1e-108,
Organism=Homo sapiens, GI27597090, Length=725, Percent_Identity=22.2068965517241, Blast_Score=107, Evalue=3e-23,
Organism=Escherichia coli, GI87082262, Length=763, Percent_Identity=68.8073394495413, Blast_Score=1070, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=39.4736842105263, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=721, Percent_Identity=28.0166435506241, Blast_Score=219, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI17552892, Length=283, Percent_Identity=27.9151943462898, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI62484314, Length=770, Percent_Identity=32.8571428571429, Blast_Score=378, Evalue=1e-105,
Organism=Drosophila melanogaster, GI24640080, Length=402, Percent_Identity=22.3880597014925, Blast_Score=77, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 85352; Mature: 85221

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQAICRLIAEELNVRSEQVTAAVNLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLS
CCHHHHHHHHHHHCCCHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
YLRELDDRRQTILKSIQDQGKLTPELERDITQADSKTRLEDLYLPYKPKRRTKGQIAIEA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEC
GLEPLADTLWNEPQHDPETEAANFISSDKGIADTKAALDGARAIVMERIAEDANLLEKIR
CCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QHLTRNSELVSRVVAGKEQAGEKFKDYFEHNETLNKVPSHRALAMLRGRNEGFLTLAMNA
HHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECC
DPEQEEGVRGSYCESIISDHYGITLSSAPADAWRKQVISWAWRIKVSMHMETELMGAMKE
CCCHHCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHH
RGEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGSKIAVVDSTGKVLATETIYPHP
CCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEECCCCCCC
PQKQYDKSAHVVEQMVRQFNVDLIAIGNGTASRETDSFVADVIKRGNLTAQKIIVSEAGA
CHHHHCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC
SVYSASELAAKEFPNMDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTMLA
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
KRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSSTIAQNIVDFRDENGRFEARTTLKKVA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
RLGPKAFEQCAGFLRIMDGKNPLDASSVHPEAYPLVKTIAEKNHKDIKSLVGNTDFLRGL
HCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHH
HAVDYTNENFGVPTVTDIIKELDKPGRDPRPEFKTATFADGVNSMSDLEPGMILEGVVSN
HHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHCCCCHHHHHHHHH
VANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVMEVDVQRKRIALSMR
HHHCCCEEEECCCCCCCEEHHHHHHHHHCCHHHHHHCCCEEEEEEEEEHHHHHHHHHHEE
MKDEPGQDNRAQRSSAPRTQNRPNQNSQGGQRRREEPQQNAAMGGAFAAAFAKAKK
ECCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQAICRLIAEELNVRSEQVTAAVNLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLS
CHHHHHHHHHHHCCCHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
YLRELDDRRQTILKSIQDQGKLTPELERDITQADSKTRLEDLYLPYKPKRRTKGQIAIEA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEC
GLEPLADTLWNEPQHDPETEAANFISSDKGIADTKAALDGARAIVMERIAEDANLLEKIR
CCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QHLTRNSELVSRVVAGKEQAGEKFKDYFEHNETLNKVPSHRALAMLRGRNEGFLTLAMNA
HHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECC
DPEQEEGVRGSYCESIISDHYGITLSSAPADAWRKQVISWAWRIKVSMHMETELMGAMKE
CCCHHCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHH
RGEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGSKIAVVDSTGKVLATETIYPHP
CCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEECCCCCCC
PQKQYDKSAHVVEQMVRQFNVDLIAIGNGTASRETDSFVADVIKRGNLTAQKIIVSEAGA
CHHHHCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC
SVYSASELAAKEFPNMDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTMLA
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
KRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSSTIAQNIVDFRDENGRFEARTTLKKVA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
RLGPKAFEQCAGFLRIMDGKNPLDASSVHPEAYPLVKTIAEKNHKDIKSLVGNTDFLRGL
HCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHH
HAVDYTNENFGVPTVTDIIKELDKPGRDPRPEFKTATFADGVNSMSDLEPGMILEGVVSN
HHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHCCCCHHHHHHHHH
VANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVMEVDVQRKRIALSMR
HHHCCCEEEECCCCCCCEEHHHHHHHHHCCHHHHHHCCCEEEEEEEEEHHHHHHHHHHEE
MKDEPGQDNRAQRSSAPRTQNRPNQNSQGGQRRREEPQQNAAMGGAFAAAFAKAKK
ECCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]