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The map label for this gene is yciR [C]

Identifier: 218708181

GI number: 218708181

Start: 108480

End: 111053

Strand: Reverse

Name: yciR [C]

Synonym: VS_0117

Alternate gene names: 218708181

Gene position: 111053-108480 (Counterclockwise)

Preceding gene: 218708182

Following gene: 218708175

Centisome position: 3.37

GC content: 43.36

Gene sequence:

>2574_bases
ATGTCTTTGAAAACACAAATTACCTTGAGAACCGCAGTGGTTCTGCCATTCGTGATGATATTTCTCTTCACTATGGGCGT
AATGATTTTCACTCAAAAGCAAAGCTACAAGGAGATGGTGAGTGATATTAGTGCGCGCCAACTAACATCACTCACTGATA
ACGTTCATCAAAGCCTTGCCGATTTTTTAGAAAAGCCATTTCACGCTAACCTTTCACTAAGTCATAACATCGGTTATCAC
AACCTTTATAAAGAGGGAGATCTTAGTCAGGTTCAAGACTACATCCTTTATAAATTTTCTCGTCATTTCCAAGCTGTTCC
CCAACTAGATGTGATTAGTTTTGGCTCTGCAGACGGTAGCTACGTCGGTTTTCGAAAAGAAGTTAACAACGGCTACACTT
TGATGGCCCGAGATGACCGAACCCAAGGCCAGCTGGTCATTTATCGTGGCCACACGATTAGCGAAGACATTCGAACCGTG
ATTTCAGCTTACGACCCAAGAGTTCGCCCTTGGTACACACCTGTCGTAGCACAGAACAAGGCATTATGGTCATCAATTTA
TGCCAATGCAGATGAACGACAAGAGATCACTTTATCGGCGCTTGCTCCTATCTATAGTGATAACGAGCTCAAAGGTGTCC
TTGCCTGCGATATCAAGATCAACACTTTTAATGCATTTCTCAAAGAGCTAAAAGATGAAACAGATGCTTCTGTTTATATT
ATTGATAGGCAACAGCGCTTAGTCGCTCATTCGGGCGGAGGCAGTGTGGTCTCTTGGGGAACAGGACAAACAGACAAAGG
CCAGCGCTTGTTAGCAACAGAGAGTGCTAACGCGGTAATACGTGAAAGTGCCCGTTATGTAGATAAGTTTAATCTAATCG
ATGATTTAAATGTGCAGCGCTTTAGTTTTAATTTAGATAACGAACGATATTTCAATCAACTTACCCCTTATGAAGATGAG
TACGGCATCACTTGGATTATTGGTATGTCGATCCCAGAAAGTAGCCTACTTGGTGAATTACCAAAAAACCAAAGAAACAG
CTGGTTACTCGGTCTAACGCTCAGTTGCATTGGTATTATCGCTGGATTAATTGCCTTTAATCGCGTAACTCAACCCATCA
CTTCAACTGCAGGGGCAGCAAAGCGCCTCGCCAAAGGTGACTGGGAGACGAGCATGCCAAAAACGGGCAATATCTATGAA
ATTAGCATGTTAACTGCGTCATTTAATGAAATGACCAACAATTTAAAGGCTTCTTTTCAGGCGTTACAGGCTCAACTTAC
CTATGACTCATTAACTAAACTGTATAGTCGTGAAGGCTTTATTGATACAGCCAAGAAAAACCCTGAAAACGAAAAAGGTA
CACTTTACTTAATTGGTATTGACCGCTTTCGAGATATTAATGATAGCCTCGGCCATTACAATGGTGACCAACTACTTATC
ATTGCGGCTGCTCGTTTAAGAGGTACGCTGCCATCGAACTTCCTGTTAGCTCGAACTGGCGGGGATGAATTTGCGATTTA
CGCTCCTAACATCAATCAAATAGATGACGTCCAGCTACTGACGAGCCGCTTGCTTCGAATCTTTACCTCCCCATTTGCCA
TGGAATCAGAAAGCGTGGTGATCAAAGTATCAATGGGGGTCGTGAATGTCTCGAACGTCAACGACATTACACTGCTGCTA
CGCAACAGCAGTATAGCCTTGAGCAACGCAAAGCAAGACAAAACCAGTGTCAGTATTTACAACCCAGAAATGGGCAAAGC
ATCGAGATATCGTACCAAGATGCTGGCACGTCTTAACAAGGCAATTGATCTTCAGCAGTTCGAGCCTTTCTATCAGCCTA
TAATCGACCTTGAATCTGGAGCTACCATAGGTGCCGAGGCTTTGGCTCGTTGGGTAACGGACGAGGGTATAATCTCACCT
TTGGAGTTCATTCCTTTAGCAGAAGAAACAGGATTGATCTACGACATTGGTAAGCAGATTTTGCACAAGTCATGTCGAGA
TACCGCAATTGCGATTGAATCTGGAAAATGGAATAAAGACTTCTCTATTCACGTTAACTTATCTGTCGACCAACTGAGTG
AAAGCGGATTTATTGAATTGGTTAAAACCACGCTGCGTGACACCAAATTACCAGCCCAAAACCTGACGCTAGAGATCACT
GAATCACGCATCGTCGACAATGACCAAACCATCATCGATAATATGCTGACGCTAAAAGCACTAGGCATCTCGATTGCAAT
TGATGACTTTGGTACCGGCTATTCGTCACTGGCTTACTTACACAAACTGCCATTTGATTGCTTAAAGATCGATCGCAGCT
TCGTCAGTAAGTTGGAAAAAGAGAACCTAGACAGCTCCATCGTCGCGGCCATCGTCAACATTACCAAGGGTTTCAAAGTG
AGTTTGGTGGCAGAAGGCGTTGAAACACAACAACAAGCTGAACTACTCAAGCAGCTTCAATGCCCATTAGCTCAAGGTTT
CTTATACAGCCGTCCAGTTCCGTTTGACCAATGGCCTACCGACCTAGGCAGTAAGCTAAATGCCAAGTTTAAAACGAATA
ACAAAGTCGAATAA

Upstream 100 bases:

>100_bases
TGCCTCTATATACATATTTTTTAAAGCTAAAAAAGTGTCGCTTGCTTTGAATAGTATCGGTACAATTACAGTACACTATC
TATCCAAACTGTAGCTAAAG

Downstream 100 bases:

>100_bases
AACGCAGAGGCTAAACAGGGCACCAAAGAGAGCCTCGCCTAAATCAGGCAGAAACCGAATGAGTCAGATACAAAAATGCC
AGCATGATGCTGGCATTTTT

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 857; Mature: 856

Protein sequence:

>857_residues
MSLKTQITLRTAVVLPFVMIFLFTMGVMIFTQKQSYKEMVSDISARQLTSLTDNVHQSLADFLEKPFHANLSLSHNIGYH
NLYKEGDLSQVQDYILYKFSRHFQAVPQLDVISFGSADGSYVGFRKEVNNGYTLMARDDRTQGQLVIYRGHTISEDIRTV
ISAYDPRVRPWYTPVVAQNKALWSSIYANADERQEITLSALAPIYSDNELKGVLACDIKINTFNAFLKELKDETDASVYI
IDRQQRLVAHSGGGSVVSWGTGQTDKGQRLLATESANAVIRESARYVDKFNLIDDLNVQRFSFNLDNERYFNQLTPYEDE
YGITWIIGMSIPESSLLGELPKNQRNSWLLGLTLSCIGIIAGLIAFNRVTQPITSTAGAAKRLAKGDWETSMPKTGNIYE
ISMLTASFNEMTNNLKASFQALQAQLTYDSLTKLYSREGFIDTAKKNPENEKGTLYLIGIDRFRDINDSLGHYNGDQLLI
IAAARLRGTLPSNFLLARTGGDEFAIYAPNINQIDDVQLLTSRLLRIFTSPFAMESESVVIKVSMGVVNVSNVNDITLLL
RNSSIALSNAKQDKTSVSIYNPEMGKASRYRTKMLARLNKAIDLQQFEPFYQPIIDLESGATIGAEALARWVTDEGIISP
LEFIPLAEETGLIYDIGKQILHKSCRDTAIAIESGKWNKDFSIHVNLSVDQLSESGFIELVKTTLRDTKLPAQNLTLEIT
ESRIVDNDQTIIDNMLTLKALGISIAIDDFGTGYSSLAYLHKLPFDCLKIDRSFVSKLEKENLDSSIVAAIVNITKGFKV
SLVAEGVETQQQAELLKQLQCPLAQGFLYSRPVPFDQWPTDLGSKLNAKFKTNNKVE

Sequences:

>Translated_857_residues
MSLKTQITLRTAVVLPFVMIFLFTMGVMIFTQKQSYKEMVSDISARQLTSLTDNVHQSLADFLEKPFHANLSLSHNIGYH
NLYKEGDLSQVQDYILYKFSRHFQAVPQLDVISFGSADGSYVGFRKEVNNGYTLMARDDRTQGQLVIYRGHTISEDIRTV
ISAYDPRVRPWYTPVVAQNKALWSSIYANADERQEITLSALAPIYSDNELKGVLACDIKINTFNAFLKELKDETDASVYI
IDRQQRLVAHSGGGSVVSWGTGQTDKGQRLLATESANAVIRESARYVDKFNLIDDLNVQRFSFNLDNERYFNQLTPYEDE
YGITWIIGMSIPESSLLGELPKNQRNSWLLGLTLSCIGIIAGLIAFNRVTQPITSTAGAAKRLAKGDWETSMPKTGNIYE
ISMLTASFNEMTNNLKASFQALQAQLTYDSLTKLYSREGFIDTAKKNPENEKGTLYLIGIDRFRDINDSLGHYNGDQLLI
IAAARLRGTLPSNFLLARTGGDEFAIYAPNINQIDDVQLLTSRLLRIFTSPFAMESESVVIKVSMGVVNVSNVNDITLLL
RNSSIALSNAKQDKTSVSIYNPEMGKASRYRTKMLARLNKAIDLQQFEPFYQPIIDLESGATIGAEALARWVTDEGIISP
LEFIPLAEETGLIYDIGKQILHKSCRDTAIAIESGKWNKDFSIHVNLSVDQLSESGFIELVKTTLRDTKLPAQNLTLEIT
ESRIVDNDQTIIDNMLTLKALGISIAIDDFGTGYSSLAYLHKLPFDCLKIDRSFVSKLEKENLDSSIVAAIVNITKGFKV
SLVAEGVETQQQAELLKQLQCPLAQGFLYSRPVPFDQWPTDLGSKLNAKFKTNNKVE
>Mature_856_residues
SLKTQITLRTAVVLPFVMIFLFTMGVMIFTQKQSYKEMVSDISARQLTSLTDNVHQSLADFLEKPFHANLSLSHNIGYHN
LYKEGDLSQVQDYILYKFSRHFQAVPQLDVISFGSADGSYVGFRKEVNNGYTLMARDDRTQGQLVIYRGHTISEDIRTVI
SAYDPRVRPWYTPVVAQNKALWSSIYANADERQEITLSALAPIYSDNELKGVLACDIKINTFNAFLKELKDETDASVYII
DRQQRLVAHSGGGSVVSWGTGQTDKGQRLLATESANAVIRESARYVDKFNLIDDLNVQRFSFNLDNERYFNQLTPYEDEY
GITWIIGMSIPESSLLGELPKNQRNSWLLGLTLSCIGIIAGLIAFNRVTQPITSTAGAAKRLAKGDWETSMPKTGNIYEI
SMLTASFNEMTNNLKASFQALQAQLTYDSLTKLYSREGFIDTAKKNPENEKGTLYLIGIDRFRDINDSLGHYNGDQLLII
AAARLRGTLPSNFLLARTGGDEFAIYAPNINQIDDVQLLTSRLLRIFTSPFAMESESVVIKVSMGVVNVSNVNDITLLLR
NSSIALSNAKQDKTSVSIYNPEMGKASRYRTKMLARLNKAIDLQQFEPFYQPIIDLESGATIGAEALARWVTDEGIISPL
EFIPLAEETGLIYDIGKQILHKSCRDTAIAIESGKWNKDFSIHVNLSVDQLSESGFIELVKTTLRDTKLPAQNLTLEITE
SRIVDNDQTIIDNMLTLKALGISIAIDDFGTGYSSLAYLHKLPFDCLKIDRSFVSKLEKENLDSSIVAAIVNITKGFKVS
LVAEGVETQQQAELLKQLQCPLAQGFLYSRPVPFDQWPTDLGSKLNAKFKTNNKVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=448, Percent_Identity=31.0267857142857, Blast_Score=213, Evalue=4e-56,
Organism=Escherichia coli, GI87081921, Length=448, Percent_Identity=30.1339285714286, Blast_Score=206, Evalue=4e-54,
Organism=Escherichia coli, GI226510982, Length=503, Percent_Identity=26.441351888668, Blast_Score=166, Evalue=7e-42,
Organism=Escherichia coli, GI1787055, Length=242, Percent_Identity=36.3636363636364, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI87081845, Length=245, Percent_Identity=35.9183673469388, Blast_Score=152, Evalue=8e-38,
Organism=Escherichia coli, GI1790496, Length=253, Percent_Identity=33.201581027668, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI87081743, Length=249, Percent_Identity=36.9477911646586, Blast_Score=143, Evalue=6e-35,
Organism=Escherichia coli, GI87081980, Length=272, Percent_Identity=31.9852941176471, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI1786507, Length=242, Percent_Identity=34.7107438016529, Blast_Score=136, Evalue=6e-33,
Organism=Escherichia coli, GI1788502, Length=239, Percent_Identity=35.1464435146443, Blast_Score=129, Evalue=8e-31,
Organism=Escherichia coli, GI87082096, Length=241, Percent_Identity=34.0248962655602, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1788849, Length=246, Percent_Identity=31.7073170731707, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI1788381, Length=376, Percent_Identity=23.6702127659574, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1787802, Length=197, Percent_Identity=29.9492385786802, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787410, Length=235, Percent_Identity=25.9574468085106, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=32.7160493827161, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 95810; Mature: 95679

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKTQITLRTAVVLPFVMIFLFTMGVMIFTQKQSYKEMVSDISARQLTSLTDNVHQSLA
CCCCEEEHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFLEKPFHANLSLSHNIGYHNLYKEGDLSQVQDYILYKFSRHFQAVPQLDVISFGSADGS
HHHCCCCCCCEEEECCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
YVGFRKEVNNGYTLMARDDRTQGQLVIYRGHTISEDIRTVISAYDPRVRPWYTPVVAQNK
EEEEEEECCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHCCH
ALWSSIYANADERQEITLSALAPIYSDNELKGVLACDIKINTFNAFLKELKDETDASVYI
HHHHHHHCCCCCCCEEEHHHHCCCCCCCCCCEEEEEEEEEHHHHHHHHHHCCCCCCEEEE
IDRQQRLVAHSGGGSVVSWGTGQTDKGQRLLATESANAVIRESARYVDKFNLIDDLNVQR
EECCCEEEEECCCCCEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEE
FSFNLDNERYFNQLTPYEDEYGITWIIGMSIPESSLLGELPKNQRNSWLLGLTLSCIGII
EEECCCCHHHHHCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHH
AGLIAFNRVTQPITSTAGAAKRLAKGDWETSMPKTGNIYEISMLTASFNEMTNNLKASFQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHH
ALQAQLTYDSLTKLYSREGFIDTAKKNPENEKGTLYLIGIDRFRDINDSLGHYNGDQLLI
HHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCHHCCCCCCCEEEE
IAAARLRGTLPSNFLLARTGGDEFAIYAPNINQIDDVQLLTSRLLRIFTSPFAMESESVV
EEEEHHCCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEE
IKVSMGVVNVSNVNDITLLLRNSSIALSNAKQDKTSVSIYNPEMGKASRYRTKMLARLNK
EEEEECEEEECCCCEEEEEEECCCEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
AIDLQQFEPFYQPIIDLESGATIGAEALARWVTDEGIISPLEFIPLAEETGLIYDIGKQI
HHCHHHCCHHHHHHEECCCCCCCCHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHH
LHKSCRDTAIAIESGKWNKDFSIHVNLSVDQLSESGFIELVKTTLRDTKLPAQNLTLEIT
HHHHCCCCEEEEECCCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEE
ESRIVDNDQTIIDNMLTLKALGISIAIDDFGTGYSSLAYLHKLPFDCLKIDRSFVSKLEK
CCEECCCCHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
ENLDSSIVAAIVNITKGFKVSLVAEGVETQQQAELLKQLQCPLAQGFLYSRPVPFDQWPT
CCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHCCHHCCCCCCCCCCH
DLGSKLNAKFKTNNKVE
HHCCCCCCEECCCCCCC
>Mature Secondary Structure 
SLKTQITLRTAVVLPFVMIFLFTMGVMIFTQKQSYKEMVSDISARQLTSLTDNVHQSLA
CCCEEEHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFLEKPFHANLSLSHNIGYHNLYKEGDLSQVQDYILYKFSRHFQAVPQLDVISFGSADGS
HHHCCCCCCCEEEECCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
YVGFRKEVNNGYTLMARDDRTQGQLVIYRGHTISEDIRTVISAYDPRVRPWYTPVVAQNK
EEEEEEECCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHCCH
ALWSSIYANADERQEITLSALAPIYSDNELKGVLACDIKINTFNAFLKELKDETDASVYI
HHHHHHHCCCCCCCEEEHHHHCCCCCCCCCCEEEEEEEEEHHHHHHHHHHCCCCCCEEEE
IDRQQRLVAHSGGGSVVSWGTGQTDKGQRLLATESANAVIRESARYVDKFNLIDDLNVQR
EECCCEEEEECCCCCEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEE
FSFNLDNERYFNQLTPYEDEYGITWIIGMSIPESSLLGELPKNQRNSWLLGLTLSCIGII
EEECCCCHHHHHCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHH
AGLIAFNRVTQPITSTAGAAKRLAKGDWETSMPKTGNIYEISMLTASFNEMTNNLKASFQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHH
ALQAQLTYDSLTKLYSREGFIDTAKKNPENEKGTLYLIGIDRFRDINDSLGHYNGDQLLI
HHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCHHCCCCCCCEEEE
IAAARLRGTLPSNFLLARTGGDEFAIYAPNINQIDDVQLLTSRLLRIFTSPFAMESESVV
EEEEHHCCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEE
IKVSMGVVNVSNVNDITLLLRNSSIALSNAKQDKTSVSIYNPEMGKASRYRTKMLARLNK
EEEEECEEEECCCCEEEEEEECCCEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
AIDLQQFEPFYQPIIDLESGATIGAEALARWVTDEGIISPLEFIPLAEETGLIYDIGKQI
HHCHHHCCHHHHHHEECCCCCCCCHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHH
LHKSCRDTAIAIESGKWNKDFSIHVNLSVDQLSESGFIELVKTTLRDTKLPAQNLTLEIT
HHHHCCCCEEEEECCCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEE
ESRIVDNDQTIIDNMLTLKALGISIAIDDFGTGYSSLAYLHKLPFDCLKIDRSFVSKLEK
CCEECCCCHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
ENLDSSIVAAIVNITKGFKVSLVAEGVETQQQAELLKQLQCPLAQGFLYSRPVPFDQWPT
CCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHCCHHCCCCCCCCCCH
DLGSKLNAKFKTNNKVE
HHCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]