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The map label for this gene is yihI

Identifier: 218708178

GI number: 218708178

Start: 105563

End: 106120

Strand: Direct

Name: yihI

Synonym: VS_0114

Alternate gene names: 218708178

Gene position: 105563-106120 (Clockwise)

Preceding gene: 218708177

Following gene: 218708179

Centisome position: 3.2

GC content: 45.16

Gene sequence:

>558_bases
ATGGGTCGTAGTAAGAAATCAAGAAAACCGGGAGCACTTGGCGCTCCGGAACCTATGGTTACTCGTAACCGTAGTGAATC
TGATGTTGAAGGTCGTGAACGTAAGCGTGTTAAAAAGCGTAAAGGCCTTAAGTCTGGCAGCCGTCACTCTGATGGTAGCG
AAGCAAAACAGCGTAAAGCTGCACTAGCTCGCGACCCTCGTTTAGGCAGCAAGAAAAAAATCCCGCTGATTGTTGAACCA
GCGAAGAAGTTGACGAAACAAGAGCGCAAGCTATCTAACGAACAAGAGTTAGAGATGCTTGAGAATGATGCTCAACTGAA
CACATTGCTAGATCGTATCGAAAATGGTGAAAACCTAGGTGCTGGTCTGCAGAAGTTTGTTGATGAGAAACTTGATCGTA
TCGAACACCTAATGGGCCGCTTAGGTCTGCTAGAGCCAGAAGACGATGAAGAAGAGATCTTCGAAGAAGCACCTGTTGCC
TCTAAGAAGAAAGCAAGCTCTGATGAAGACTTGCTATCTCAATTCGAAGATTTCGACTTAGACAGCTTTAAAGGTTAA

Upstream 100 bases:

>100_bases
TCTTCTTTAGTCGTCAAACATTCCAGTTTTTGGCAGAGCGGGATAAGCTCGAACTAGAATTTTTTGGAAATGATGTAATT
TTACTGAGGAAAGTGCAGTA

Downstream 100 bases:

>100_bases
TAGCCAATGAACGTAACCTTATTAGCAATTGCTGGTGGAATTATCATTCTCGGCTTGGGCTCTTACGCAGGTTACCTTCT
ACTTCAAGTGAAGAAGCAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MGRSKKSRKPGALGAPEPMVTRNRSESDVEGRERKRVKKRKGLKSGSRHSDGSEAKQRKAALARDPRLGSKKKIPLIVEP
AKKLTKQERKLSNEQELEMLENDAQLNTLLDRIENGENLGAGLQKFVDEKLDRIEHLMGRLGLLEPEDDEEEIFEEAPVA
SKKKASSDEDLLSQFEDFDLDSFKG

Sequences:

>Translated_185_residues
MGRSKKSRKPGALGAPEPMVTRNRSESDVEGRERKRVKKRKGLKSGSRHSDGSEAKQRKAALARDPRLGSKKKIPLIVEP
AKKLTKQERKLSNEQELEMLENDAQLNTLLDRIENGENLGAGLQKFVDEKLDRIEHLMGRLGLLEPEDDEEEIFEEAPVA
SKKKASSDEDLLSQFEDFDLDSFKG
>Mature_184_residues
GRSKKSRKPGALGAPEPMVTRNRSESDVEGRERKRVKKRKGLKSGSRHSDGSEAKQRKAALARDPRLGSKKKIPLIVEPA
KKLTKQERKLSNEQELEMLENDAQLNTLLDRIENGENLGAGLQKFVDEKLDRIEHLMGRLGLLEPEDDEEEIFEEAPVAS
KKKASSDEDLLSQFEDFDLDSFKG

Specific function: A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis

COG id: COG3078

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YihI family

Homologues:

Organism=Escherichia coli, GI1790297, Length=129, Percent_Identity=48.062015503876, Blast_Score=80, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIHI_VIBSL (B7VHD5)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002415799.1
- GeneID:   7159787
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_0114
- HOGENOM:   HBG303443
- OMA:   AQKKDPR
- ProtClustDB:   PRK05244
- HAMAP:   MF_01058
- InterPro:   IPR007336

Pfam domain/function: PF04220 DUF414

EC number: NA

Molecular weight: Translated: 20852; Mature: 20721

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRSKKSRKPGALGAPEPMVTRNRSESDVEGRERKRVKKRKGLKSGSRHSDGSEAKQRKA
CCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
ALARDPRLGSKKKIPLIVEPAKKLTKQERKLSNEQELEMLENDAQLNTLLDRIENGENLG
HHHCCCCCCCCCCCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
AGLQKFVDEKLDRIEHLMGRLGLLEPEDDEEEIFEEAPVASKKKASSDEDLLSQFEDFDL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHCCCCHHHHHHHHHHCCC
DSFKG
CCCCC
>Mature Secondary Structure 
GRSKKSRKPGALGAPEPMVTRNRSESDVEGRERKRVKKRKGLKSGSRHSDGSEAKQRKA
CCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
ALARDPRLGSKKKIPLIVEPAKKLTKQERKLSNEQELEMLENDAQLNTLLDRIENGENLG
HHHCCCCCCCCCCCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
AGLQKFVDEKLDRIEHLMGRLGLLEPEDDEEEIFEEAPVASKKKASSDEDLLSQFEDFDL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHCCCCHHHHHHHHHHCCC
DSFKG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA