| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218708147
Identifier: 218708147
GI number: 218708147
Start: 71259
End: 72974
Strand: Reverse
Name: 218708147
Synonym: VS_0081
Alternate gene names: NA
Gene position: 72974-71259 (Counterclockwise)
Preceding gene: 218708148
Following gene: 218708146
Centisome position: 2.21
GC content: 43.47
Gene sequence:
>1716_bases ATGAAGGATGTACGAGTAATGAAAAAAGTGAGTATTCTCGCAGCAGCGATTGCAGTGGCTTTAACAGGTTGTGGTAGCGA CAGTTCTAATTCAGGTGTCACAACACCGACAGGACCATCCACAACAACCAACAAGTTTATCGATGCCGCTGTTGAAGGTA TCTACTACAGCACTAGCTCTGGTTCAAAGGGCATCACAAACAGCGAAGGCGAATTTACCGCTAAGTCTGACGATACGGTG ACCTTCTTCATTGGTGGTGAAAATGGCTTGAAAGTAGGGGCAGCATCAAACCGTGATGTACTGACACCATTTGAAGCGGC GGGCAAATACGACCGAGCTCTAAATTTAGCAATTCTACTTCAGTCTTTAGATAACCAATTTGGTAGCGCTTCTGATGAAG TACTGACAATTCCAGATGCGTTGCGCGAACCTGATGCTGCGACGTTAGCGAAGATGAAAAACCTAAGTCTAGATGACCGT GATTCTGTTACAGACTTCCTAACAGCGATGGGAGTCACTTCAATTACTAATGAATCTGAAGCATTGGCTCATATGGAGAA AGCATTCGGAGAAAAATCAGGGACTGTTCGCGGCAGCGCTGATGCCAATCCATTTGTAGCGAAAAATGGGCAATTTATTC GCTCAATCATGGTGAGACAGTATGATATTAACGATCCAAACAACCGCCCTAACGACAAAACAATGTTAGTTCACGCTGAC AAAATGCTCCCTAAAGCTGTGTTTGAACATACACGTGGCACGCCTTACTTCACTTATCAAGATTCAGCCAATGGTCTTAT TGCTGTAAGTGACAGCGACTCTTTATTGTCATACGCAGACGCTGAAAAGTACATCAGCTGTGTATTGGCAGGGAGTTCTG CAGGCTGCAATCAAACAGCTCACCCAGACTTCACCCTAAACGCTCCGTTTTCTTACCTTCTACTTGATAAAAGCAAAGAA AATACCACACCTAAACCAGAGAGTTACGGTTGGGCACCTTTCATTGAAGGGAATCAACAAGTCCTCAACCACTACACGCC AAACAAACTGGAAGATGATCGAGATGAAGGCGATGCAACCCCTTCATACCAATATGAAACTCTTTCAGGTAGCTATGACC CAATTACAAAAATATACACACAAATTCGTTCAAAAACAGAGTTAAGCGACCCATCAAGCGAATCAAGTAAAGCAAAGCGT ATCGAAGAAAGTTTGAATTTCTACTATCACGTAGAAACACCTAGTGACGAAAGGTACGTGGATTTCACTGGGTCTTGGGA TACCACTCAGATTTGCGCTGATGGACAAAATGCTGTCATGAGAATGGTATTTGATTCTGAGGGCGCTACCGTATCAGGGA AAGAGTGCAATGCAAACTCACCGGCAGATCTTGAAGACTCAGGCAAGAAGTATACCTATGAAGAGCTTGCTGCAATTGAC TATTGGTGGTTTAACATTTCAGGACGTGAATCAAAAGCAACACTGACAGATCTAAACTCAGTCGTGCGCTTCTGTGATGA TACTGACAATGGTTATATTCCTGGTTCAGGAGATAAATGTCCTGTTGATGCAAATGGTAATAATCAAGAATACATCATTA AATGGGAGTATCAGCCAGCAGGTACTAACTGGGATGAAGGGTTGCTAACTCGCCGTAAAATGACTCCAGACGGATCAACA ACAGGCCGTGTTAGCATCATGCAGAAAATCAACTAA
Upstream 100 bases:
>100_bases TAACCGAACAGCATTTTACATGCTTAACTTGGAATCAAGATCAAACTACAATCGCGCGCTATAAAATTACACGCATAAAA AAAACAATTAGCTCTAATAC
Downstream 100 bases:
>100_bases CCTTTGAGTTAGTTTGATGACTTATTAATAAACCAGAAGCTGAGCTTCTGGTTTTTTCATTTTTAACACACATGAACCTT CAAACAACCATCAACGTAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 571; Mature: 571
Protein sequence:
>571_residues MKDVRVMKKVSILAAAIAVALTGCGSDSSNSGVTTPTGPSTTTNKFIDAAVEGIYYSTSSGSKGITNSEGEFTAKSDDTV TFFIGGENGLKVGAASNRDVLTPFEAAGKYDRALNLAILLQSLDNQFGSASDEVLTIPDALREPDAATLAKMKNLSLDDR DSVTDFLTAMGVTSITNESEALAHMEKAFGEKSGTVRGSADANPFVAKNGQFIRSIMVRQYDINDPNNRPNDKTMLVHAD KMLPKAVFEHTRGTPYFTYQDSANGLIAVSDSDSLLSYADAEKYISCVLAGSSAGCNQTAHPDFTLNAPFSYLLLDKSKE NTTPKPESYGWAPFIEGNQQVLNHYTPNKLEDDRDEGDATPSYQYETLSGSYDPITKIYTQIRSKTELSDPSSESSKAKR IEESLNFYYHVETPSDERYVDFTGSWDTTQICADGQNAVMRMVFDSEGATVSGKECNANSPADLEDSGKKYTYEELAAID YWWFNISGRESKATLTDLNSVVRFCDDTDNGYIPGSGDKCPVDANGNNQEYIIKWEYQPAGTNWDEGLLTRRKMTPDGST TGRVSIMQKIN
Sequences:
>Translated_571_residues MKDVRVMKKVSILAAAIAVALTGCGSDSSNSGVTTPTGPSTTTNKFIDAAVEGIYYSTSSGSKGITNSEGEFTAKSDDTV TFFIGGENGLKVGAASNRDVLTPFEAAGKYDRALNLAILLQSLDNQFGSASDEVLTIPDALREPDAATLAKMKNLSLDDR DSVTDFLTAMGVTSITNESEALAHMEKAFGEKSGTVRGSADANPFVAKNGQFIRSIMVRQYDINDPNNRPNDKTMLVHAD KMLPKAVFEHTRGTPYFTYQDSANGLIAVSDSDSLLSYADAEKYISCVLAGSSAGCNQTAHPDFTLNAPFSYLLLDKSKE NTTPKPESYGWAPFIEGNQQVLNHYTPNKLEDDRDEGDATPSYQYETLSGSYDPITKIYTQIRSKTELSDPSSESSKAKR IEESLNFYYHVETPSDERYVDFTGSWDTTQICADGQNAVMRMVFDSEGATVSGKECNANSPADLEDSGKKYTYEELAAID YWWFNISGRESKATLTDLNSVVRFCDDTDNGYIPGSGDKCPVDANGNNQEYIIKWEYQPAGTNWDEGLLTRRKMTPDGST TGRVSIMQKIN >Mature_571_residues MKDVRVMKKVSILAAAIAVALTGCGSDSSNSGVTTPTGPSTTTNKFIDAAVEGIYYSTSSGSKGITNSEGEFTAKSDDTV TFFIGGENGLKVGAASNRDVLTPFEAAGKYDRALNLAILLQSLDNQFGSASDEVLTIPDALREPDAATLAKMKNLSLDDR DSVTDFLTAMGVTSITNESEALAHMEKAFGEKSGTVRGSADANPFVAKNGQFIRSIMVRQYDINDPNNRPNDKTMLVHAD KMLPKAVFEHTRGTPYFTYQDSANGLIAVSDSDSLLSYADAEKYISCVLAGSSAGCNQTAHPDFTLNAPFSYLLLDKSKE NTTPKPESYGWAPFIEGNQQVLNHYTPNKLEDDRDEGDATPSYQYETLSGSYDPITKIYTQIRSKTELSDPSSESSKAKR IEESLNFYYHVETPSDERYVDFTGSWDTTQICADGQNAVMRMVFDSEGATVSGKECNANSPADLEDSGKKYTYEELAAID YWWFNISGRESKATLTDLNSVVRFCDDTDNGYIPGSGDKCPVDANGNNQEYIIKWEYQPAGTNWDEGLLTRRKMTPDGST TGRVSIMQKIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62280; Mature: 62280
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDVRVMKKVSILAAAIAVALTGCGSDSSNSGVTTPTGPSTTTNKFIDAAVEGIYYSTSS CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEECCC GSKGITNSEGEFTAKSDDTVTFFIGGENGLKVGAASNRDVLTPFEAAGKYDRALNLAILL CCCCCCCCCCCEEECCCCEEEEEEECCCCEEECCCCCCCCCCCHHHCCCHHHHHHHHHHH QSLDNQFGSASDEVLTIPDALREPDAATLAKMKNLSLDDRDSVTDFLTAMGVTSITNESE HHHHHHHCCCCCCEEECCHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCHHHCCCHHH ALAHMEKAFGEKSGTVRGSADANPFVAKNGQFIRSIMVRQYDINDPNNRPNDKTMLVHAD HHHHHHHHHCCCCCCEECCCCCCCEEECCCHHHHHHHHHEECCCCCCCCCCCCEEEEEHH KMLPKAVFEHTRGTPYFTYQDSANGLIAVSDSDSLLSYADAEKYISCVLAGSSAGCNQTA HHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHEEEEEEECCCCCCCCCC HPDFTLNAPFSYLLLDKSKENTTPKPESYGWAPFIEGNQQVLNHYTPNKLEDDRDEGDAT CCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCEECCCHHHHHCCCCCCCCCCCCCCCCC PSYQYETLSGSYDPITKIYTQIRSKTELSDPSSESSKAKRIEESLNFYYHVETPSDERYV CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEE DFTGSWDTTQICADGQNAVMRMVFDSEGATVSGKECNANSPADLEDSGKKYTYEELAAID EEECCCCCEEEECCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCEECHHHHHEEE YWWFNISGRESKATLTDLNSVVRFCDDTDNGYIPGSGDKCPVDANGNNQEYIIKWEYQPA EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCEEEEEEEEECC GTNWDEGLLTRRKMTPDGSTTGRVSIMQKIN CCCCHHHHHHHCCCCCCCCCCCEEEEEEECC >Mature Secondary Structure MKDVRVMKKVSILAAAIAVALTGCGSDSSNSGVTTPTGPSTTTNKFIDAAVEGIYYSTSS CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEECCC GSKGITNSEGEFTAKSDDTVTFFIGGENGLKVGAASNRDVLTPFEAAGKYDRALNLAILL CCCCCCCCCCCEEECCCCEEEEEEECCCCEEECCCCCCCCCCCHHHCCCHHHHHHHHHHH QSLDNQFGSASDEVLTIPDALREPDAATLAKMKNLSLDDRDSVTDFLTAMGVTSITNESE HHHHHHHCCCCCCEEECCHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCHHHCCCHHH ALAHMEKAFGEKSGTVRGSADANPFVAKNGQFIRSIMVRQYDINDPNNRPNDKTMLVHAD HHHHHHHHHCCCCCCEECCCCCCCEEECCCHHHHHHHHHEECCCCCCCCCCCCEEEEEHH KMLPKAVFEHTRGTPYFTYQDSANGLIAVSDSDSLLSYADAEKYISCVLAGSSAGCNQTA HHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHEEEEEEECCCCCCCCCC HPDFTLNAPFSYLLLDKSKENTTPKPESYGWAPFIEGNQQVLNHYTPNKLEDDRDEGDAT CCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCEECCCHHHHHCCCCCCCCCCCCCCCCC PSYQYETLSGSYDPITKIYTQIRSKTELSDPSSESSKAKRIEESLNFYYHVETPSDERYV CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEE DFTGSWDTTQICADGQNAVMRMVFDSEGATVSGKECNANSPADLEDSGKKYTYEELAAID EEECCCCCEEEECCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCEECHHHHHEEE YWWFNISGRESKATLTDLNSVVRFCDDTDNGYIPGSGDKCPVDANGNNQEYIIKWEYQPA EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCEEEEEEEEECC GTNWDEGLLTRRKMTPDGSTTGRVSIMQKIN CCCCHHHHHHHCCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA