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The map label for this gene is gspD [C]

Identifier: 218708107

GI number: 218708107

Start: 17835

End: 19142

Strand: Direct

Name: gspD [C]

Synonym: VS_0019

Alternate gene names: 218708107

Gene position: 17835-19142 (Clockwise)

Preceding gene: 218708106

Following gene: 218708108

Centisome position: 0.54

GC content: 43.73

Gene sequence:

>1308_bases
ATGTTGACTTTAGTATTGGTTCTGCTGCTTCCATTCGAGGTTTTGGCTCAAGGCTCGACTAATTTAGCTCAGGGAGAAGC
TAAAACCTTTTCGATTCGAGGGGAAATCGCTTCTGTTTTTATCTCAGGGAAGAATATTGCAGATTACCAAGTGATTGATA
GTAATAAGGTCGTGGTGTTTGGGAAGAATATCGGATCTGCCTCGTTTATCGCATTTGATGCGAAAGGGCGTGAATTATTT
AACCGCTTATTGTTGGTGAATAAAAGTTATCGCGAAATAGAGCAACAAATTGATGTGTTATTTCCCGATGCGGAAGTGTT
TGTAGCAGGCATCGGTGAGAACGTTGTTCTGAGTGGTGTCGTCGCTAATGAACAGGAAAAGGATAACATTCACCAGTTGG
TGGGTGAGCTTTTGGGGAAAACAGCGAACTCAACCTCTTTTCAAATGAGTGATGAAGAGAGTGACGACATTGATGTGGGT
TTTATGACTCAACTTAATTACGCAGGCGTCGTGAATAATATCGAAATATCAGCGACTAAGCAGGTGAACGTTAAGTTGAC
CATTGCAGAGGTATCGCACTCTTTTATGCAAGACTTCGGCATCAAGATGGGCAGCAATGGTACGCCCGGCATCTTTGTGG
ATCAACTTACTCATTTTAGTGCTAGCGATATTGTCTCTGTTATTTCAGCTTTAGGTACCGATAGCGTTGGTCAAGTTCTA
GCTGAACCTAATTTGTCGGTGATTTCAGGTGAGAAAGCGAGTTTCTTAGTGGGTGGAGAACTGCCCGTTGTGACGGTTAT
AGATGGTGCAACCAACGTTGAATATAAGGAATTCGGTGTGCGACTGGAATTACTGGCTAAGGTGCTTCGAGATGACAAAA
TTAAGCTAGCACTGACACCAGAGGTTAGCTCCCTAGATGGTAGTTACAGCAGTGACAACTTTGATTTACCAGCATTAAGA
ACACGACGCGCCCAGACAACCGTGGAACTGGGGGATGGACAAAGCTTCGTTCTTGGTGGGTTGCTTAACAGTGAAGAGAA
AGAGTCACTGACTCGAATTCCCTACATTGGTGATATACCTATTATCGGTGCTTTGTTTCGCCATACAGGAACCGAACGTA
GTAAAACTGAGTTAGTCATTGTAGCGACCGTTAATTTAGTTCAACCAGTCAAAGCGGAGCAGATCCAATTACCGACGATG
AAAAAGACTAGCACGCTCAAGCGCTTTTTTGGACTAGGCAGTGGCTATGAACAATCACAACAAAAGTGGGCTGATGAAGT
TTTGTCTGCTGGAGGGTTTAGCCAATGA

Upstream 100 bases:

>100_bases
GATCTAGAAGCTGATTCTTCAGACATCATTCCAAGCAGTGGCGGCACTGGTGGAATTCGTGAATACCGTTTTGAGTAGGG
CGTTAACCATGAAAACAACA

Downstream 100 bases:

>100_bases
AATCATTGATGGTTACTTTGTTTACCGCCGTCATTATTACAGGGTGTGTTGACCGTATATCGGAGCCTCGCGGAACGGAA
GTTGAAGTTTTTCCTGTGAC

Product: putative bacterial type II secretion system protein D; rcpA, CpaC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MLTLVLVLLLPFEVLAQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAKGRELF
NRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVGELLGKTANSTSFQMSDEESDDIDVG
FMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSFMQDFGIKMGSNGTPGIFVDQLTHFSASDIVSVISALGTDSVGQVL
AEPNLSVISGEKASFLVGGELPVVTVIDGATNVEYKEFGVRLELLAKVLRDDKIKLALTPEVSSLDGSYSSDNFDLPALR
TRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPYIGDIPIIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPTM
KKTSTLKRFFGLGSGYEQSQQKWADEVLSAGGFSQ

Sequences:

>Translated_435_residues
MLTLVLVLLLPFEVLAQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAKGRELF
NRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVGELLGKTANSTSFQMSDEESDDIDVG
FMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSFMQDFGIKMGSNGTPGIFVDQLTHFSASDIVSVISALGTDSVGQVL
AEPNLSVISGEKASFLVGGELPVVTVIDGATNVEYKEFGVRLELLAKVLRDDKIKLALTPEVSSLDGSYSSDNFDLPALR
TRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPYIGDIPIIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPTM
KKTSTLKRFFGLGSGYEQSQQKWADEVLSAGGFSQ
>Mature_435_residues
MLTLVLVLLLPFEVLAQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAKGRELF
NRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVGELLGKTANSTSFQMSDEESDDIDVG
FMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSFMQDFGIKMGSNGTPGIFVDQLTHFSASDIVSVISALGTDSVGQVL
AEPNLSVISGEKASFLVGGELPVVTVIDGATNVEYKEFGVRLELLAKVLRDDKIKLALTPEVSSLDGSYSSDNFDLPALR
TRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPYIGDIPIIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPTM
KKTSTLKRFFGLGSGYEQSQQKWADEVLSAGGFSQ

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=160, Percent_Identity=36.875, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1789793, Length=162, Percent_Identity=32.0987654320988, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 46966; Mature: 46966

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLVLVLLLPFEVLAQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVF
CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECEEEEEEEECCCCCEEEEECCCEEEEE
GKNIGSASFIAFDAKGRELFNRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGV
ECCCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHEECCCCEEEEEECCCCEEEEEE
VANEQEKDNIHQLVGELLGKTANSTSFQMSDEESDDIDVGFMTQLNYAGVVNNIEISATK
ECCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCEECEEEEEEE
QVNVKLTIAEVSHSFMQDFGIKMGSNGTPGIFVDQLTHFSASDIVSVISALGTDSVGQVL
EEEEEEEHHHHHHHHHHHHCCEECCCCCCCEEHHHHHCCCHHHHHHHHHHHCCCHHHHHH
AEPNLSVISGEKASFLVGGELPVVTVIDGATNVEYKEFGVRLELLAKVLRDDKIKLALTP
CCCCCEEEECCCCEEEECCCCCEEEEECCCCCCCHHHHCHHHHHHHHHHCCCCEEEEECC
EVSSLDGSYSSDNFDLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPYIGDIP
CHHCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCEEEEECCCCCHHHHHHHCCCCCCCCH
IIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPTMKKTSTLKRFFGLGSGYEQSQ
HHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCEECCCCHHHHHHHHHHCCCCCHHHHH
QKWADEVLSAGGFSQ
HHHHHHHHHCCCCCC
>Mature Secondary Structure
MLTLVLVLLLPFEVLAQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVF
CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECEEEEEEEECCCCCEEEEECCCEEEEE
GKNIGSASFIAFDAKGRELFNRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGV
ECCCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHEECCCCEEEEEECCCCEEEEEE
VANEQEKDNIHQLVGELLGKTANSTSFQMSDEESDDIDVGFMTQLNYAGVVNNIEISATK
ECCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCEECEEEEEEE
QVNVKLTIAEVSHSFMQDFGIKMGSNGTPGIFVDQLTHFSASDIVSVISALGTDSVGQVL
EEEEEEEHHHHHHHHHHHHCCEECCCCCCCEEHHHHHCCCHHHHHHHHHHHCCCHHHHHH
AEPNLSVISGEKASFLVGGELPVVTVIDGATNVEYKEFGVRLELLAKVLRDDKIKLALTP
CCCCCEEEECCCCEEEECCCCCEEEEECCCCCCCHHHHCHHHHHHHHHHCCCCEEEEECC
EVSSLDGSYSSDNFDLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPYIGDIP
CHHCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCEEEEECCCCCHHHHHHHCCCCCCCCH
IIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPTMKKTSTLKRFFGLGSGYEQSQ
HHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCEECCCCHHHHHHHHHHCCCCCHHHHH
QKWADEVLSAGGFSQ
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]