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The map label for this gene is ydhX [H]

Identifier: 218705169

GI number: 218705169

Start: 1985123

End: 1985791

Strand: Reverse

Name: ydhX [H]

Synonym: ECUMN_1960

Alternate gene names: 218705169

Gene position: 1985791-1985123 (Counterclockwise)

Preceding gene: 218705170

Following gene: 218705168

Centisome position: 38.17

GC content: 49.33

Gene sequence:

>669_bases
ATGTCCTTCACTCGACGCAAATTTGTTCTGGGGATGGGAACAGTAATCTTTTTTACTGGTTCTGCGTCTTCTCTGTTAGC
GAACACGAGGCAAGAAAAGAAAGTTCGGTATGCCATGATTCATGACGAGTCACGGTGCAATGGCTGTAATATTTGCGCCC
GCGCATGCCGTAAAACTAACCACGTCCCCGCTCAGGGAAGCCGTTTATCGATAGCACACATTCCAGTCACCGATAACGAC
AACGAAACGCAGTATCACTATTTTCGCCAGTCATGCCAGCACTGTGAAGATGCTCCTTGCATCGACGTATGCCCGACAGG
GGCGTCGTGGCGTGATGAGCAGGGGATCGTGCGGGTAGAAAAATCGCAGTGCATCGGCTGCAGTTATTGCATTGGCGCTT
GTCCTTACCAGGTTCGCTACCTTAACCCTGTCACTAAAGTGGCAGATAAATGTGATTTCTGCGCTGAGTCCCGACTGGCA
AAAGGCTTTCCGCCCATTTGCGTCAGCGCCTGTCCGGAACATGCATTGATCTTTGGTCGCGAAGATAGCCCAGAAATTCA
GGCGTGGTTGCAGGAAAATAAATACTATCAATATCAGCTACCTGGTGCCGGGAAACCGCATCTGTATCGCCGATTCGGTC
AACATTTGATTAAAAAGGAAAATGTATGA

Upstream 100 bases:

>100_bases
CGAATGGTTTGAGGTAGAGCAGTTTCAGAACCCCTGAAATTTCAGGGAGATGTCATGGATAGGGTGGACAGTTGCAGCCA
CTGCATTAGGGGATAATCAG

Downstream 100 bases:

>100_bases
ACCCGTCGCAACATGCTGAACAGTTTCAGAGCCAGTTGGCGAACTATGTGCCACAATTCACTCCCGAATTTTGGCCGGTG
TGGTTGATCATTGCCGGACT

Product: putative 4Fe-4S ferridoxin-type subunit of oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDND
NETQYHYFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLA
KGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Sequences:

>Translated_222_residues
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDND
NETQYHYFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLA
KGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>Mature_221_residues
SFTRRKFVLGMGTVIFFTGSASSLLANTRQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDN
ETQYHYFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAK
GFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI226510944, Length=222, Percent_Identity=98.6486486486486, Blast_Score=463, Evalue=1e-132,
Organism=Escherichia coli, GI2367345, Length=213, Percent_Identity=49.2957746478873, Blast_Score=216, Evalue=7e-58,
Organism=Escherichia coli, GI1787122, Length=155, Percent_Identity=39.3548387096774, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1787872, Length=152, Percent_Identity=39.4736842105263, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1789370, Length=215, Percent_Identity=31.1627906976744, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787749, Length=188, Percent_Identity=30.8510638297872, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790326, Length=162, Percent_Identity=30.8641975308642, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789067, Length=158, Percent_Identity=35.4430379746835, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1787963, Length=151, Percent_Identity=29.1390728476821, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI2367245, Length=144, Percent_Identity=36.8055555555556, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787740, Length=90, Percent_Identity=36.6666666666667, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787478, Length=90, Percent_Identity=36.6666666666667, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788811, Length=148, Percent_Identity=33.7837837837838, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25109; Mature: 24978

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
7.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKKVRYAMIHDESRCNGCNICARACRKTN
CCCCHHHHHEECCEEEEEECCCHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHCC
HVPAQGSRLSIAHIPVTDNDNETQYHYFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVE
CCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEC
KSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGR
CCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEECC
EDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SFTRRKFVLGMGTVIFFTGSASSLLANTRQEKKVRYAMIHDESRCNGCNICARACRKTN
CCCHHHHHEECCEEEEEECCCHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHCC
HVPAQGSRLSIAHIPVTDNDNETQYHYFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVE
CCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEC
KSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGR
CCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEECC
EDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]