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The map label for this gene is ynfC [H]

Identifier: 218705084

GI number: 218705084

Start: 1890507

End: 1891217

Strand: Reverse

Name: ynfC [H]

Synonym: ECUMN_1870

Alternate gene names: 218705084

Gene position: 1891217-1890507 (Counterclockwise)

Preceding gene: 218705092

Following gene: 218705081

Centisome position: 36.35

GC content: 43.6

Gene sequence:

>711_bases
GTGAAATACAAATTACTGCCATGCTTACTCGCGATATTCCTCACAGGATGTGACCGAACAGAGGTAACACTTTCATTTAC
CCCTGAGATGGCCAGTTTCTCTAATGAATTCGATTTTGATCCGCTGCGTGGTCCGGTAAAAGATTTCACTCAGACATTAA
TGGATGAGCAAGGTGAAGTGACGAAACGTGTTTCGGGGACTTTGTCGGAAGAAGGCTGTTTTGATTCACTCGAATTACTG
GATCTGGAAAATAATACCGTGGTTGCCCTGGTACTGGACGCCAATTATTACCGTGATGCCCAGACACTGGAGAAAAGAGT
TCGTTTGCAGGGAAAATGCCAGCTAGCAGAATTACCTTCTGCCGGGGTGAGTTGGGAAACCGATGATAATGGCTTTGTGA
TTAAAGCCAGCAGCAAACAGATGCAGATGGAATATCGCTATGATGATCAGGGGTATCCGCTGGGTAAAACCACGAAAAGT
CACGACAAAACATTATCTGTTAGCGCCACGCCATCAACGGACCCGATCAAAAAATTAGATTACACAGCGGTTACTATACT
GAATAATCAAAGAGTTGGTAATGTAAAACAGAGCTGTGAATATGACAGTCACGCCAATCCGGTGGACTGTCAGCTAATCA
TTGTTGATGAAGGAGTAAAACCCGCCATCGAACGGGTTTACACCATCAAAAATACTATCGATTATTATTAA

Upstream 100 bases:

>100_bases
TCCTTACGCGAAGATAACTTCTTTAAGCATAGCATTTAACGTGTAAAGTACTGTATTTGCTACTATGATTGAGAATCATC
TCTACTCTCTGGTGACTGTT

Downstream 100 bases:

>100_bases
TGCTATTGTGCGGTCGGCTTCAGGAGAGTCTGACCCGGTGTTTTGTGCTCTGCCAGATACTGATGCTGGAATATGCACAT
GCGAATGGCATTCCGATATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELL
DLENNTVVALVLDANYYRDAQTLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS
HDKTLSVSATPSTDPIKKLDYTAVTILNNQRVGNVKQSCEYDSHANPVDCQLIIVDEGVKPAIERVYTIKNTIDYY

Sequences:

>Translated_236_residues
MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELL
DLENNTVVALVLDANYYRDAQTLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS
HDKTLSVSATPSTDPIKKLDYTAVTILNNQRVGNVKQSCEYDSHANPVDCQLIIVDEGVKPAIERVYTIKNTIDYY
>Mature_236_residues
MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELL
DLENNTVVALVLDANYYRDAQTLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS
HDKTLSVSATPSTDPIKKLDYTAVTILNNQRVGNVKQSCEYDSHANPVDCQLIIVDEGVKPAIERVYTIKNTIDYY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0257 family [H]

Homologues:

Organism=Escherichia coli, GI87081939, Length=236, Percent_Identity=98.3050847457627, Blast_Score=484, Evalue=1e-138,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010646
- ProDom:   PD120112 [H]

Pfam domain/function: PF06788 UPF0257 [H]

EC number: NA

Molecular weight: Translated: 26543; Mature: 26543

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEV
CCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCH
TKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAQTLEKRVRLQGKCQLAELPS
HHHHHCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCC
AGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKSHDKTLSVSATPSTDPIKKLD
CCCCEEECCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCC
YTAVTILNNQRVGNVKQSCEYDSHANPVDCQLIIVDEGVKPAIERVYTIKNTIDYY
EEEEEEECCCCCCCHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEV
CCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCH
TKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAQTLEKRVRLQGKCQLAELPS
HHHHHCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCC
AGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKSHDKTLSVSATPSTDPIKKLD
CCCCEEECCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCC
YTAVTILNNQRVGNVKQSCEYDSHANPVDCQLIIVDEGVKPAIERVYTIKNTIDYY
EEEEEEECCCCCCCHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA